Hb_000836_420

Information

Type transcription factor
Description TF Family: WRKY
Location Contig836: 381445-382739
Sequence    

Annotation

kegg
ID rcu:RCOM_1616660
description WRKY transcription factor, putative
nr
ID XP_002511920.1
description WRKY transcription factor, putative [Ricinus communis]
swissprot
ID O04609
description WRKY transcription factor 22 OS=Arabidopsis thaliana GN=WRKY22 PE=2 SV=1
trembl
ID B9RDY1
description WRKY transcription factor, putative OS=Ricinus communis GN=RCOM_1616660 PE=4 SV=1
Gene Ontology
ID GO:0003700
description wrky transcription factor 22

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000836_420 0.0 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
2 Hb_001160_050 0.0672624632 - - PREDICTED: long-chain-alcohol oxidase FAO1 [Jatropha curcas]
3 Hb_189208_060 0.0864020126 - - PREDICTED: two-pore potassium channel 5 [Jatropha curcas]
4 Hb_001660_080 0.0888921698 - - hypothetical protein JCGZ_14829 [Jatropha curcas]
5 Hb_002374_030 0.0936867431 - - PREDICTED: probable receptor-like protein kinase At1g11050 isoform X1 [Jatropha curcas]
6 Hb_121540_010 0.0955777806 - - PREDICTED: UDP-glycosyltransferase 88A1-like [Jatropha curcas]
7 Hb_003078_070 0.0971680567 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At3g25290 [Jatropha curcas]
8 Hb_000152_410 0.0986555938 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
9 Hb_028486_010 0.1023270235 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
10 Hb_000985_140 0.1032079512 - - PREDICTED: uncharacterized protein LOC105643381 isoform X3 [Jatropha curcas]
11 Hb_000454_080 0.1037506798 - - PREDICTED: arginine decarboxylase [Jatropha curcas]
12 Hb_000071_090 0.105362289 - - PREDICTED: probable protein phosphatase 2C 4 [Jatropha curcas]
13 Hb_000172_410 0.1056512462 - - metal ion binding protein, putative [Ricinus communis]
14 Hb_004109_240 0.109121591 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
15 Hb_021254_020 0.1125001391 - - calmodulin binding protein, putative [Ricinus communis]
16 Hb_008810_030 0.1140715675 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
17 Hb_004393_030 0.1146381613 - - CBL-interacting protein kinase 6 [Populus trichocarpa]
18 Hb_004837_200 0.117185166 - - hypothetical protein POPTR_0001s26450g [Populus trichocarpa]
19 Hb_003060_150 0.1173732264 - - UDP-glucosyltransferase, putative [Ricinus communis]
20 Hb_077694_010 0.1174753146 - - uncharacterized protein LOC100305624 [Glycine max]

Gene co-expression network

sample Hb_000836_420 Hb_000836_420 Hb_001160_050 Hb_001160_050 Hb_000836_420--Hb_001160_050 Hb_189208_060 Hb_189208_060 Hb_000836_420--Hb_189208_060 Hb_001660_080 Hb_001660_080 Hb_000836_420--Hb_001660_080 Hb_002374_030 Hb_002374_030 Hb_000836_420--Hb_002374_030 Hb_121540_010 Hb_121540_010 Hb_000836_420--Hb_121540_010 Hb_003078_070 Hb_003078_070 Hb_000836_420--Hb_003078_070 Hb_001160_050--Hb_002374_030 Hb_000878_090 Hb_000878_090 Hb_001160_050--Hb_000878_090 Hb_001160_050--Hb_189208_060 Hb_009907_020 Hb_009907_020 Hb_001160_050--Hb_009907_020 Hb_000152_410 Hb_000152_410 Hb_001160_050--Hb_000152_410 Hb_189208_060--Hb_002374_030 Hb_011794_050 Hb_011794_050 Hb_189208_060--Hb_011794_050 Hb_189208_060--Hb_001660_080 Hb_189208_060--Hb_000152_410 Hb_005381_010 Hb_005381_010 Hb_001660_080--Hb_005381_010 Hb_001660_080--Hb_121540_010 Hb_003060_150 Hb_003060_150 Hb_001660_080--Hb_003060_150 Hb_000035_140 Hb_000035_140 Hb_001660_080--Hb_000035_140 Hb_008406_070 Hb_008406_070 Hb_002374_030--Hb_008406_070 Hb_000071_090 Hb_000071_090 Hb_002374_030--Hb_000071_090 Hb_000032_090 Hb_000032_090 Hb_002374_030--Hb_000032_090 Hb_121540_010--Hb_003060_150 Hb_121540_010--Hb_005381_010 Hb_000069_530 Hb_000069_530 Hb_121540_010--Hb_000069_530 Hb_028486_010 Hb_028486_010 Hb_121540_010--Hb_028486_010 Hb_077694_010 Hb_077694_010 Hb_121540_010--Hb_077694_010 Hb_000985_140 Hb_000985_140 Hb_003078_070--Hb_000985_140 Hb_021254_020 Hb_021254_020 Hb_003078_070--Hb_021254_020 Hb_000172_410 Hb_000172_410 Hb_003078_070--Hb_000172_410 Hb_004837_200 Hb_004837_200 Hb_003078_070--Hb_004837_200 Hb_003078_070--Hb_000071_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0634931 24.0113 29.4371 12.0324 0.0198357 0.0231118
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0484438 0.190511 0 2.92411 6.17354

CAGE analysis