Hb_000836_440

Information

Type -
Description -
Location Contig836: 384046-385684
Sequence    

Annotation

kegg
ID rcu:RCOM_1616680
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002511922.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RDY3
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1616680 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59975: 384934-385325 , PASA_asmbl_59976: 386131-388340
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000836_440 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_004155_010 0.0752632153 - - PREDICTED: la protein 1 [Jatropha curcas]
3 Hb_165928_020 0.0777998363 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
4 Hb_012098_110 0.0832535219 - - Ribonuclease 3 [Gossypium arboreum]
5 Hb_000926_190 0.0843153381 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
6 Hb_002084_020 0.0888505451 - - hypothetical protein JCGZ_04066 [Jatropha curcas]
7 Hb_023386_020 0.0892645957 - - PREDICTED: chaperone protein dnaJ 13 isoform X2 [Jatropha curcas]
8 Hb_006064_010 0.0897179873 - - PREDICTED: DDB1- and CUL4-associated factor 4 [Jatropha curcas]
9 Hb_000160_210 0.0900771707 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000920_060 0.0916323565 - - PREDICTED: intron-binding protein aquarius [Jatropha curcas]
11 Hb_000856_110 0.0916724818 - - PREDICTED: uncharacterized protein LOC105640477 isoform X2 [Jatropha curcas]
12 Hb_030736_100 0.0950599857 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004100_080 0.0961677945 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001258_090 0.0963130773 - - PREDICTED: protein spt2-like [Jatropha curcas]
15 Hb_000879_200 0.0976937008 - - PREDICTED: A-kinase anchor protein 17A [Jatropha curcas]
16 Hb_000502_050 0.099088238 transcription factor TF Family: HSF Heat shock factor protein HSF8, putative [Ricinus communis]
17 Hb_005914_060 0.1002530728 - - PREDICTED: splicing factor U2af large subunit A [Jatropha curcas]
18 Hb_000820_170 0.1025697561 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
19 Hb_023386_040 0.1026948307 - - PREDICTED: chaperone protein dnaJ 13-like [Populus euphratica]
20 Hb_011139_030 0.1036066394 - - PREDICTED: E3 ubiquitin-protein ligase MBR2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000836_440 Hb_000836_440 Hb_004155_010 Hb_004155_010 Hb_000836_440--Hb_004155_010 Hb_165928_020 Hb_165928_020 Hb_000836_440--Hb_165928_020 Hb_012098_110 Hb_012098_110 Hb_000836_440--Hb_012098_110 Hb_000926_190 Hb_000926_190 Hb_000836_440--Hb_000926_190 Hb_002084_020 Hb_002084_020 Hb_000836_440--Hb_002084_020 Hb_023386_020 Hb_023386_020 Hb_000836_440--Hb_023386_020 Hb_030736_100 Hb_030736_100 Hb_004155_010--Hb_030736_100 Hb_000160_210 Hb_000160_210 Hb_004155_010--Hb_000160_210 Hb_077562_050 Hb_077562_050 Hb_004155_010--Hb_077562_050 Hb_000453_170 Hb_000453_170 Hb_004155_010--Hb_000453_170 Hb_004724_060 Hb_004724_060 Hb_004155_010--Hb_004724_060 Hb_000120_920 Hb_000120_920 Hb_165928_020--Hb_000120_920 Hb_004841_010 Hb_004841_010 Hb_165928_020--Hb_004841_010 Hb_165928_020--Hb_023386_020 Hb_016172_020 Hb_016172_020 Hb_165928_020--Hb_016172_020 Hb_004412_010 Hb_004412_010 Hb_165928_020--Hb_004412_010 Hb_000062_430 Hb_000062_430 Hb_165928_020--Hb_000062_430 Hb_007262_020 Hb_007262_020 Hb_012098_110--Hb_007262_020 Hb_007026_030 Hb_007026_030 Hb_012098_110--Hb_007026_030 Hb_007904_120 Hb_007904_120 Hb_012098_110--Hb_007904_120 Hb_010381_060 Hb_010381_060 Hb_012098_110--Hb_010381_060 Hb_000714_050 Hb_000714_050 Hb_012098_110--Hb_000714_050 Hb_000498_010 Hb_000498_010 Hb_012098_110--Hb_000498_010 Hb_000926_190--Hb_023386_020 Hb_023386_040 Hb_023386_040 Hb_000926_190--Hb_023386_040 Hb_007054_060 Hb_007054_060 Hb_000926_190--Hb_007054_060 Hb_000334_270 Hb_000334_270 Hb_000926_190--Hb_000334_270 Hb_000794_050 Hb_000794_050 Hb_000926_190--Hb_000794_050 Hb_000879_200 Hb_000879_200 Hb_000926_190--Hb_000879_200 Hb_048476_180 Hb_048476_180 Hb_002084_020--Hb_048476_180 Hb_003938_080 Hb_003938_080 Hb_002084_020--Hb_003938_080 Hb_002084_020--Hb_165928_020 Hb_000820_170 Hb_000820_170 Hb_002084_020--Hb_000820_170 Hb_000034_040 Hb_000034_040 Hb_002084_020--Hb_000034_040 Hb_004100_080 Hb_004100_080 Hb_023386_020--Hb_004100_080 Hb_002518_280 Hb_002518_280 Hb_023386_020--Hb_002518_280 Hb_033720_010 Hb_033720_010 Hb_023386_020--Hb_033720_010 Hb_156973_010 Hb_156973_010 Hb_023386_020--Hb_156973_010 Hb_023386_020--Hb_000879_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.886724 0.67548 0.740383 0.209845 0.884354 1.3943
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.620842 0.843338 0.649681 0.500902 0.721694

CAGE analysis