Hb_000836_450

Information

Type -
Description -
Location Contig836: 386006-388681
Sequence    

Annotation

kegg
ID rcu:RCOM_1616690
description 3-methyl-2-oxobutanoate hydroxymethyltransferase, putative (EC:2.1.2.11)
nr
ID XP_012073897.1
description PREDICTED: 3-methyl-2-oxobutanoate hydroxymethyltransferase 1, mitochondrial-like [Jatropha curcas]
swissprot
ID Q9M315
description 3-methyl-2-oxobutanoate hydroxymethyltransferase 2, mitochondrial OS=Arabidopsis thaliana GN=KPHMT2 PE=1 SV=1
trembl
ID A0A067KNV3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07886 PE=3 SV=1
Gene Ontology
ID GO:0005739
description 3-methyl-2-oxobutanoate hydroxymethyltransferase mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59976: 386131-388340
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000836_450 0.0 - - PREDICTED: 3-methyl-2-oxobutanoate hydroxymethyltransferase 1, mitochondrial-like [Jatropha curcas]
2 Hb_002799_110 0.0946819809 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
3 Hb_003086_150 0.1018988775 - - PREDICTED: uncharacterized protein LOC105635789 [Jatropha curcas]
4 Hb_001218_040 0.1057632689 - - Mitochondrial substrate carrier family protein [Theobroma cacao]
5 Hb_000340_570 0.1086256392 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
6 Hb_000059_360 0.111224901 - - PREDICTED: uncharacterized protein LOC105648671 [Jatropha curcas]
7 Hb_000205_090 0.1117438581 - - hypothetical protein POPTR_0019s03570g [Populus trichocarpa]
8 Hb_000046_100 0.1140399465 - - NADH dehydrogenase, putative [Ricinus communis]
9 Hb_002490_020 0.1146772862 - - peptidyl-tRNA hydrolase family protein [Populus trichocarpa]
10 Hb_005183_120 0.1171023495 - - protein translocase, putative [Ricinus communis]
11 Hb_000069_600 0.1172443687 - - PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]
12 Hb_065525_090 0.1173141997 - - PREDICTED: CASP-like protein 4C1 [Vitis vinifera]
13 Hb_005446_010 0.1187646584 - - PREDICTED: zinc finger protein 830 [Jatropha curcas]
14 Hb_001268_420 0.1194356164 - - PREDICTED: uncharacterized protein LOC105630158 [Jatropha curcas]
15 Hb_002660_070 0.1197643804 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]
16 Hb_001983_020 0.1199030708 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
17 Hb_000962_040 0.1216224725 - - heat shock protein binding protein, putative [Ricinus communis]
18 Hb_001545_160 0.1217992093 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC102615208 isoform X1 [Citrus sinensis]
19 Hb_000668_040 0.1218893761 - - PREDICTED: random slug protein 5-like [Jatropha curcas]
20 Hb_017225_020 0.1218909942 - - PREDICTED: protein BRICK 1 [Gossypium raimondii]

Gene co-expression network

sample Hb_000836_450 Hb_000836_450 Hb_002799_110 Hb_002799_110 Hb_000836_450--Hb_002799_110 Hb_003086_150 Hb_003086_150 Hb_000836_450--Hb_003086_150 Hb_001218_040 Hb_001218_040 Hb_000836_450--Hb_001218_040 Hb_000340_570 Hb_000340_570 Hb_000836_450--Hb_000340_570 Hb_000059_360 Hb_000059_360 Hb_000836_450--Hb_000059_360 Hb_000205_090 Hb_000205_090 Hb_000836_450--Hb_000205_090 Hb_000614_220 Hb_000614_220 Hb_002799_110--Hb_000614_220 Hb_027654_060 Hb_027654_060 Hb_002799_110--Hb_027654_060 Hb_000614_160 Hb_000614_160 Hb_002799_110--Hb_000614_160 Hb_002799_110--Hb_003086_150 Hb_000260_030 Hb_000260_030 Hb_002799_110--Hb_000260_030 Hb_002490_020 Hb_002490_020 Hb_002799_110--Hb_002490_020 Hb_000827_050 Hb_000827_050 Hb_003086_150--Hb_000827_050 Hb_000236_040 Hb_000236_040 Hb_003086_150--Hb_000236_040 Hb_050514_010 Hb_050514_010 Hb_003086_150--Hb_050514_010 Hb_001314_070 Hb_001314_070 Hb_003086_150--Hb_001314_070 Hb_000529_170 Hb_000529_170 Hb_003086_150--Hb_000529_170 Hb_001396_100 Hb_001396_100 Hb_001218_040--Hb_001396_100 Hb_000224_140 Hb_000224_140 Hb_001218_040--Hb_000224_140 Hb_001904_090 Hb_001904_090 Hb_001218_040--Hb_001904_090 Hb_003349_080 Hb_003349_080 Hb_001218_040--Hb_003349_080 Hb_001616_030 Hb_001616_030 Hb_001218_040--Hb_001616_030 Hb_000680_140 Hb_000680_140 Hb_001218_040--Hb_000680_140 Hb_001545_160 Hb_001545_160 Hb_000340_570--Hb_001545_160 Hb_006831_120 Hb_006831_120 Hb_000340_570--Hb_006831_120 Hb_010175_040 Hb_010175_040 Hb_000340_570--Hb_010175_040 Hb_004899_370 Hb_004899_370 Hb_000340_570--Hb_004899_370 Hb_000261_140 Hb_000261_140 Hb_000340_570--Hb_000261_140 Hb_000340_570--Hb_000205_090 Hb_048476_110 Hb_048476_110 Hb_000059_360--Hb_048476_110 Hb_007044_120 Hb_007044_120 Hb_000059_360--Hb_007044_120 Hb_002374_100 Hb_002374_100 Hb_000059_360--Hb_002374_100 Hb_003207_190 Hb_003207_190 Hb_000059_360--Hb_003207_190 Hb_001221_210 Hb_001221_210 Hb_000059_360--Hb_001221_210 Hb_003813_030 Hb_003813_030 Hb_000059_360--Hb_003813_030 Hb_004109_170 Hb_004109_170 Hb_000205_090--Hb_004109_170 Hb_010098_050 Hb_010098_050 Hb_000205_090--Hb_010098_050 Hb_118419_010 Hb_118419_010 Hb_000205_090--Hb_118419_010 Hb_000205_090--Hb_000236_040 Hb_000656_240 Hb_000656_240 Hb_000205_090--Hb_000656_240 Hb_004116_190 Hb_004116_190 Hb_000205_090--Hb_004116_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.7588 6.11786 13.4029 4.78634 5.19254 7.85542
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.9185 18.7236 21.3757 10.8389 10.7936

CAGE analysis