Hb_000836_470

Information

Type -
Description -
Location Contig836: 400460-403954
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59979: 400449-403712 , PASA_asmbl_59980: 402001-402245
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000836_470 0.0 - - -
2 Hb_001728_030 0.0577223898 - - 60S ribosomal protein L15 [Populus trichocarpa]
3 Hb_002811_170 0.0604411393 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
4 Hb_003018_020 0.0680735606 - - PREDICTED: uncharacterized protein LOC105628697 [Jatropha curcas]
5 Hb_003018_010 0.0697813887 - - PREDICTED: 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic [Jatropha curcas]
6 Hb_002798_020 0.0702975218 - - PREDICTED: uncharacterized protein LOC105647735 [Jatropha curcas]
7 Hb_002056_050 0.0715164167 - - PREDICTED: uncharacterized protein LOC105130744 [Populus euphratica]
8 Hb_003226_100 0.0753272032 - - PREDICTED: 60S ribosomal protein L18-2 [Jatropha curcas]
9 Hb_000735_090 0.0776490064 - - PREDICTED: 40S ribosomal protein S8-like [Gossypium raimondii]
10 Hb_000329_200 0.0803874171 - - PREDICTED: uncharacterized protein LOC105639316 [Jatropha curcas]
11 Hb_004157_030 0.0811094692 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
12 Hb_001016_150 0.0813980305 - - Rop1 [Hevea brasiliensis]
13 Hb_001279_080 0.0818044392 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105140180 isoform X1 [Populus euphratica]
14 Hb_001989_090 0.0819172367 - - PREDICTED: stomatin-like protein 2, mitochondrial [Jatropha curcas]
15 Hb_007747_050 0.0826300054 - - Peptidyl-prolyl cis-trans isomerase cypE, putative [Ricinus communis]
16 Hb_001863_430 0.0833065133 - - PREDICTED: probable protein phosphatase 2C 9 [Populus euphratica]
17 Hb_007065_010 0.0839705284 - - hypothetical protein Csa_3G379730 [Cucumis sativus]
18 Hb_001341_150 0.0849814907 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
19 Hb_028396_010 0.0864004941 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]
20 Hb_014720_040 0.0867226153 - - PREDICTED: 50S ribosomal protein L12, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000836_470 Hb_000836_470 Hb_001728_030 Hb_001728_030 Hb_000836_470--Hb_001728_030 Hb_002811_170 Hb_002811_170 Hb_000836_470--Hb_002811_170 Hb_003018_020 Hb_003018_020 Hb_000836_470--Hb_003018_020 Hb_003018_010 Hb_003018_010 Hb_000836_470--Hb_003018_010 Hb_002798_020 Hb_002798_020 Hb_000836_470--Hb_002798_020 Hb_002056_050 Hb_002056_050 Hb_000836_470--Hb_002056_050 Hb_001728_030--Hb_002811_170 Hb_002078_140 Hb_002078_140 Hb_001728_030--Hb_002078_140 Hb_001016_150 Hb_001016_150 Hb_001728_030--Hb_001016_150 Hb_000172_320 Hb_000172_320 Hb_001728_030--Hb_000172_320 Hb_001989_090 Hb_001989_090 Hb_001728_030--Hb_001989_090 Hb_007747_050 Hb_007747_050 Hb_002811_170--Hb_007747_050 Hb_001931_010 Hb_001931_010 Hb_002811_170--Hb_001931_010 Hb_001863_430 Hb_001863_430 Hb_002811_170--Hb_001863_430 Hb_002811_170--Hb_001016_150 Hb_003226_100 Hb_003226_100 Hb_003018_020--Hb_003226_100 Hb_004157_030 Hb_004157_030 Hb_003018_020--Hb_004157_030 Hb_174865_010 Hb_174865_010 Hb_003018_020--Hb_174865_010 Hb_000506_070 Hb_000506_070 Hb_003018_020--Hb_000506_070 Hb_001141_140 Hb_001141_140 Hb_003018_020--Hb_001141_140 Hb_003018_010--Hb_003226_100 Hb_000025_620 Hb_000025_620 Hb_003018_010--Hb_000025_620 Hb_002226_060 Hb_002226_060 Hb_003018_010--Hb_002226_060 Hb_000656_240 Hb_000656_240 Hb_003018_010--Hb_000656_240 Hb_000996_140 Hb_000996_140 Hb_003018_010--Hb_000996_140 Hb_007065_010 Hb_007065_010 Hb_002798_020--Hb_007065_010 Hb_007576_170 Hb_007576_170 Hb_002798_020--Hb_007576_170 Hb_000265_050 Hb_000265_050 Hb_002798_020--Hb_000265_050 Hb_002798_020--Hb_003226_100 Hb_004127_020 Hb_004127_020 Hb_002798_020--Hb_004127_020 Hb_002798_020--Hb_002056_050 Hb_000920_110 Hb_000920_110 Hb_002056_050--Hb_000920_110 Hb_010068_020 Hb_010068_020 Hb_002056_050--Hb_010068_020 Hb_002056_050--Hb_003226_100 Hb_003540_240 Hb_003540_240 Hb_002056_050--Hb_003540_240 Hb_002056_050--Hb_000172_320 Hb_001484_070 Hb_001484_070 Hb_002056_050--Hb_001484_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.54282 2.701 9.68793 8.09506 7.10668 7.41068
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.8164 23.1568 7.57014 7.75996 6.08457

CAGE analysis