Hb_000836_490

Information

Type -
Description -
Location Contig836: 406625-414310
Sequence    

Annotation

kegg
ID vvi:100256919
description uncharacterized LOC100256919
nr
ID XP_012083826.1
description PREDICTED: E3 SUMO-protein ligase pli1-like [Jatropha curcas]
swissprot
ID O94451
description E3 SUMO-protein ligase pli1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pli1 PE=1 SV=3
trembl
ID F6HUN6
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0025g00470 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59981: 407493-408043
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000836_490 0.0 - - PREDICTED: E3 SUMO-protein ligase pli1-like [Jatropha curcas]
2 Hb_007885_050 0.1429611715 - - PREDICTED: lignin-forming anionic peroxidase-like [Jatropha curcas]
3 Hb_003777_360 0.1967879422 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
4 Hb_000594_090 0.2031361721 - - PREDICTED: allene oxide cyclase 3, chloroplastic-like [Populus euphratica]
5 Hb_004208_130 0.2046815551 - - hypothetical protein JCGZ_16532 [Jatropha curcas]
6 Hb_028271_020 0.2218714988 - - acyl-CoA oxidase, putative [Ricinus communis]
7 Hb_000117_100 0.2301732243 - - conserved hypothetical protein [Ricinus communis]
8 Hb_026527_020 0.2399937041 - - PREDICTED: putative methyltransferase DDB_G0268948 [Jatropha curcas]
9 Hb_002260_160 0.2405396315 - - conserved hypothetical protein [Ricinus communis]
10 Hb_008725_040 0.2420679378 - - PREDICTED: uncharacterized protein At4g29660 [Nelumbo nucifera]
11 Hb_005054_270 0.244201827 - - -
12 Hb_001123_100 0.2468223386 - - PREDICTED: uncharacterized protein LOC105647337 isoform X1 [Jatropha curcas]
13 Hb_001059_120 0.2472057686 - - NADH dehydrogenase, putative [Ricinus communis]
14 Hb_100180_010 0.2506933126 - - PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
15 Hb_003750_030 0.2530604666 - - calmodulin-binding heat-shock protein, putative [Ricinus communis]
16 Hb_014497_080 0.2558529109 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
17 Hb_000062_300 0.2561500999 - - PREDICTED: uncharacterized protein LOC105644761 [Jatropha curcas]
18 Hb_000297_020 0.2585384639 - - PREDICTED: protein phosphatase 2C 77 [Jatropha curcas]
19 Hb_017170_030 0.2592474054 - - PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Jatropha curcas]
20 Hb_007218_100 0.2592734701 - - phosphofructokinase [Hevea brasiliensis]

Gene co-expression network

sample Hb_000836_490 Hb_000836_490 Hb_007885_050 Hb_007885_050 Hb_000836_490--Hb_007885_050 Hb_003777_360 Hb_003777_360 Hb_000836_490--Hb_003777_360 Hb_000594_090 Hb_000594_090 Hb_000836_490--Hb_000594_090 Hb_004208_130 Hb_004208_130 Hb_000836_490--Hb_004208_130 Hb_028271_020 Hb_028271_020 Hb_000836_490--Hb_028271_020 Hb_000117_100 Hb_000117_100 Hb_000836_490--Hb_000117_100 Hb_007885_050--Hb_000117_100 Hb_007885_050--Hb_000594_090 Hb_026527_020 Hb_026527_020 Hb_007885_050--Hb_026527_020 Hb_008725_040 Hb_008725_040 Hb_007885_050--Hb_008725_040 Hb_006538_190 Hb_006538_190 Hb_007885_050--Hb_006538_190 Hb_003777_360--Hb_000117_100 Hb_009974_020 Hb_009974_020 Hb_003777_360--Hb_009974_020 Hb_003777_360--Hb_028271_020 Hb_000130_230 Hb_000130_230 Hb_003777_360--Hb_000130_230 Hb_001488_370 Hb_001488_370 Hb_003777_360--Hb_001488_370 Hb_029879_090 Hb_029879_090 Hb_000594_090--Hb_029879_090 Hb_038134_010 Hb_038134_010 Hb_000594_090--Hb_038134_010 Hb_000563_260 Hb_000563_260 Hb_000594_090--Hb_000563_260 Hb_000594_090--Hb_008725_040 Hb_000297_020 Hb_000297_020 Hb_004208_130--Hb_000297_020 Hb_000907_170 Hb_000907_170 Hb_004208_130--Hb_000907_170 Hb_145084_010 Hb_145084_010 Hb_004208_130--Hb_145084_010 Hb_004931_100 Hb_004931_100 Hb_004208_130--Hb_004931_100 Hb_002138_010 Hb_002138_010 Hb_004208_130--Hb_002138_010 Hb_002609_060 Hb_002609_060 Hb_004208_130--Hb_002609_060 Hb_001449_100 Hb_001449_100 Hb_028271_020--Hb_001449_100 Hb_002784_100 Hb_002784_100 Hb_028271_020--Hb_002784_100 Hb_012053_010 Hb_012053_010 Hb_028271_020--Hb_012053_010 Hb_003540_200 Hb_003540_200 Hb_028271_020--Hb_003540_200 Hb_033834_050 Hb_033834_050 Hb_028271_020--Hb_033834_050 Hb_000997_190 Hb_000997_190 Hb_028271_020--Hb_000997_190 Hb_000732_210 Hb_000732_210 Hb_000117_100--Hb_000732_210 Hb_000117_100--Hb_009974_020 Hb_004787_040 Hb_004787_040 Hb_000117_100--Hb_004787_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0886867 0.823566 0.680866 0.902816 0.00573614 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.98773 10.3771 3.81993 6.3789 0.568168

CAGE analysis