Hb_000836_530

Information

Type -
Description -
Location Contig836: 434878-442321
Sequence    

Annotation

kegg
ID mtr:MTR_3g008420
description 60S ribosomal protein L23
nr
ID XP_012072680.1
description PREDICTED: uncharacterized protein LOC105634429 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SZ30
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0494170 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59985: 434369-435038 , PASA_asmbl_59986: 435123-440462
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000836_530 0.0 - - PREDICTED: uncharacterized protein LOC105634429 [Jatropha curcas]
2 Hb_002791_010 0.0961453292 - - PREDICTED: general transcription factor 3C polypeptide 3-like isoform X2 [Jatropha curcas]
3 Hb_001258_030 0.1203360761 - - tRNA-dihydrouridine synthase, putative [Ricinus communis]
4 Hb_000865_060 0.1231605855 transcription factor TF Family: FAR1 hypothetical protein CISIN_1g043648mg [Citrus sinensis]
5 Hb_001500_040 0.1243622325 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X2 [Jatropha curcas]
6 Hb_000574_390 0.1255699236 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Jatropha curcas]
7 Hb_007632_220 0.130754521 - - RNA-binding protein, putative [Ricinus communis]
8 Hb_086639_040 0.1326309126 - - PREDICTED: phosphatidylinositol 4-kinase gamma 7-like [Jatropha curcas]
9 Hb_006915_050 0.1333458884 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1 [Jatropha curcas]
10 Hb_002496_050 0.1369280541 - - PREDICTED: uncharacterized protein LOC105630509 [Jatropha curcas]
11 Hb_001002_030 0.1369477825 - - PREDICTED: uncharacterized protein LOC105643537 [Jatropha curcas]
12 Hb_003106_060 0.1372548792 - - hypothetical protein POPTR_0015s08140g [Populus trichocarpa]
13 Hb_013405_030 0.1376459512 - - conserved hypothetical protein [Ricinus communis]
14 Hb_015198_020 0.138777335 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003142_020 0.14122323 - - PREDICTED: uncharacterized protein LOC105648334 [Jatropha curcas]
16 Hb_005539_360 0.1412966088 - - kinesin light chain, putative [Ricinus communis]
17 Hb_164926_030 0.1413168265 - - PREDICTED: uncharacterized protein LOC105645602 [Jatropha curcas]
18 Hb_001007_060 0.1414431012 - - Transcriptional corepressor SEUSS [Glycine soja]
19 Hb_011242_040 0.1421505402 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 1 isoform X1 [Jatropha curcas]
20 Hb_007672_050 0.1421558986 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000836_530 Hb_000836_530 Hb_002791_010 Hb_002791_010 Hb_000836_530--Hb_002791_010 Hb_001258_030 Hb_001258_030 Hb_000836_530--Hb_001258_030 Hb_000865_060 Hb_000865_060 Hb_000836_530--Hb_000865_060 Hb_001500_040 Hb_001500_040 Hb_000836_530--Hb_001500_040 Hb_000574_390 Hb_000574_390 Hb_000836_530--Hb_000574_390 Hb_007632_220 Hb_007632_220 Hb_000836_530--Hb_007632_220 Hb_002783_260 Hb_002783_260 Hb_002791_010--Hb_002783_260 Hb_001009_310 Hb_001009_310 Hb_002791_010--Hb_001009_310 Hb_002496_050 Hb_002496_050 Hb_002791_010--Hb_002496_050 Hb_001007_060 Hb_001007_060 Hb_002791_010--Hb_001007_060 Hb_005396_130 Hb_005396_130 Hb_002791_010--Hb_005396_130 Hb_086639_040 Hb_086639_040 Hb_001258_030--Hb_086639_040 Hb_009382_010 Hb_009382_010 Hb_001258_030--Hb_009382_010 Hb_005237_050 Hb_005237_050 Hb_001258_030--Hb_005237_050 Hb_000352_270 Hb_000352_270 Hb_001258_030--Hb_000352_270 Hb_082609_010 Hb_082609_010 Hb_001258_030--Hb_082609_010 Hb_007416_270 Hb_007416_270 Hb_000865_060--Hb_007416_270 Hb_001090_050 Hb_001090_050 Hb_000865_060--Hb_001090_050 Hb_001002_030 Hb_001002_030 Hb_000865_060--Hb_001002_030 Hb_005188_090 Hb_005188_090 Hb_000865_060--Hb_005188_090 Hb_011242_040 Hb_011242_040 Hb_000865_060--Hb_011242_040 Hb_168773_010 Hb_168773_010 Hb_000865_060--Hb_168773_010 Hb_006400_060 Hb_006400_060 Hb_001500_040--Hb_006400_060 Hb_001269_550 Hb_001269_550 Hb_001500_040--Hb_001269_550 Hb_001959_210 Hb_001959_210 Hb_001500_040--Hb_001959_210 Hb_002016_110 Hb_002016_110 Hb_001500_040--Hb_002016_110 Hb_000483_200 Hb_000483_200 Hb_001500_040--Hb_000483_200 Hb_006915_050 Hb_006915_050 Hb_001500_040--Hb_006915_050 Hb_013405_030 Hb_013405_030 Hb_000574_390--Hb_013405_030 Hb_015198_020 Hb_015198_020 Hb_000574_390--Hb_015198_020 Hb_000631_080 Hb_000631_080 Hb_000574_390--Hb_000631_080 Hb_000574_390--Hb_086639_040 Hb_000574_390--Hb_011242_040 Hb_000707_050 Hb_000707_050 Hb_000574_390--Hb_000707_050 Hb_085781_010 Hb_085781_010 Hb_007632_220--Hb_085781_010 Hb_000047_030 Hb_000047_030 Hb_007632_220--Hb_000047_030 Hb_007632_220--Hb_000574_390 Hb_007632_220--Hb_013405_030 Hb_002686_290 Hb_002686_290 Hb_007632_220--Hb_002686_290 Hb_007632_220--Hb_015198_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.45038 0.839579 0.239877 0.136367 1.76843 1.37019
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.15754 1.50815 2.66346 1.08418 1.7174

CAGE analysis