Hb_000836_560

Information

Type -
Description -
Location Contig836: 452558-453372
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59990: 449498-451816
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000836_560 0.0 - - -
2 Hb_000265_020 0.138614265 - - hypothetical protein POPTR_0011s16980g, partial [Populus trichocarpa]
3 Hb_001140_320 0.144160211 - - PREDICTED: oxalate--CoA ligase [Jatropha curcas]
4 Hb_033045_010 0.1470802514 - - copine, putative [Ricinus communis]
5 Hb_006970_150 0.1507191233 - - PREDICTED: uncharacterized protein LOC105650471 [Jatropha curcas]
6 Hb_001374_040 0.1636410826 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Gossypium raimondii]
7 Hb_002518_270 0.1642181126 - - glycogen phosphorylase, putative [Ricinus communis]
8 Hb_012018_020 0.1652064155 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Eucalyptus grandis]
9 Hb_063523_010 0.1737335566 - - -
10 Hb_003337_050 0.1766310533 - - PREDICTED: probable protein phosphatase 2C 78 [Jatropha curcas]
11 Hb_000489_020 0.1818220287 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Populus euphratica]
12 Hb_000223_050 0.1839575796 - - PREDICTED: endochitinase A-like [Jatropha curcas]
13 Hb_000002_100 0.1855414521 - - phosphate transporter [Manihot esculenta]
14 Hb_001514_100 0.1868696767 - - PREDICTED: F-box protein GID2 [Jatropha curcas]
15 Hb_002085_070 0.1898263303 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
16 Hb_001769_030 0.1903134247 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
17 Hb_008948_080 0.1929833048 - - PREDICTED: TBC1 domain family member 13-like isoform X1 [Jatropha curcas]
18 Hb_001388_020 0.193963964 - - PREDICTED: F-box/kelch-repeat protein SKIP20 [Jatropha curcas]
19 Hb_000177_130 0.1978413243 - - wall-associated kinase, putative [Ricinus communis]
20 Hb_000252_080 0.1991034808 - - PREDICTED: uncharacterized protein LOC105644644 [Jatropha curcas]

Gene co-expression network

sample Hb_000836_560 Hb_000836_560 Hb_000265_020 Hb_000265_020 Hb_000836_560--Hb_000265_020 Hb_001140_320 Hb_001140_320 Hb_000836_560--Hb_001140_320 Hb_033045_010 Hb_033045_010 Hb_000836_560--Hb_033045_010 Hb_006970_150 Hb_006970_150 Hb_000836_560--Hb_006970_150 Hb_001374_040 Hb_001374_040 Hb_000836_560--Hb_001374_040 Hb_002518_270 Hb_002518_270 Hb_000836_560--Hb_002518_270 Hb_000265_020--Hb_033045_010 Hb_000489_020 Hb_000489_020 Hb_000265_020--Hb_000489_020 Hb_002085_070 Hb_002085_070 Hb_000265_020--Hb_002085_070 Hb_000265_020--Hb_006970_150 Hb_000521_290 Hb_000521_290 Hb_000265_020--Hb_000521_290 Hb_012018_020 Hb_012018_020 Hb_000265_020--Hb_012018_020 Hb_000575_090 Hb_000575_090 Hb_001140_320--Hb_000575_090 Hb_000067_030 Hb_000067_030 Hb_001140_320--Hb_000067_030 Hb_001140_320--Hb_001374_040 Hb_007919_030 Hb_007919_030 Hb_001140_320--Hb_007919_030 Hb_001365_050 Hb_001365_050 Hb_001140_320--Hb_001365_050 Hb_033045_010--Hb_006970_150 Hb_063523_010 Hb_063523_010 Hb_033045_010--Hb_063523_010 Hb_033045_010--Hb_000489_020 Hb_003337_050 Hb_003337_050 Hb_033045_010--Hb_003337_050 Hb_031862_020 Hb_031862_020 Hb_033045_010--Hb_031862_020 Hb_000075_110 Hb_000075_110 Hb_006970_150--Hb_000075_110 Hb_006970_150--Hb_002518_270 Hb_000120_070 Hb_000120_070 Hb_006970_150--Hb_000120_070 Hb_008948_080 Hb_008948_080 Hb_006970_150--Hb_008948_080 Hb_001374_040--Hb_000575_090 Hb_001374_040--Hb_006970_150 Hb_001374_040--Hb_031862_020 Hb_000237_070 Hb_000237_070 Hb_001374_040--Hb_000237_070 Hb_000417_120 Hb_000417_120 Hb_001374_040--Hb_000417_120 Hb_006501_170 Hb_006501_170 Hb_002518_270--Hb_006501_170 Hb_002518_270--Hb_003337_050 Hb_002518_270--Hb_033045_010 Hb_002518_270--Hb_008948_080 Hb_001946_060 Hb_001946_060 Hb_002518_270--Hb_001946_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.60567 0.997481 0.113017 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.144686 0 1.53829 0.51554

CAGE analysis