Hb_000836_600

Information

Type -
Description -
Location Contig836: 465312-466676
Sequence    

Annotation

kegg
ID tcc:TCM_005234
description Fatty acid/sphingolipid desaturase
nr
ID XP_012083290.1
description PREDICTED: delta(8)-fatty-acid desaturase 2 [Jatropha curcas]
swissprot
ID Q3EBF7
description Delta(8)-fatty-acid desaturase 2 OS=Arabidopsis thaliana GN=SLD2 PE=1 SV=1
trembl
ID D3YLK3
description Delta-8 sphingolipid desaturase OS=Vernicia fordii PE=2 SV=1
Gene Ontology
ID GO:0016021
description delta -fatty-acid desaturase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 053_K04.ab1: 466175-466837

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000836_600 0.0 - - PREDICTED: delta(8)-fatty-acid desaturase 2 [Jatropha curcas]
2 Hb_001133_010 0.080075236 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004013_020 0.1181985486 - - PREDICTED: F-box protein SKIP2 [Jatropha curcas]
4 Hb_000200_170 0.1189532435 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Populus euphratica]
5 Hb_143766_030 0.1213220729 - - protein with unknown function [Ricinus communis]
6 Hb_002876_250 0.1268499371 - - PREDICTED: receptor-like protein kinase 2 [Jatropha curcas]
7 Hb_002849_070 0.128845491 - - PREDICTED: protein BPS1, chloroplastic [Jatropha curcas]
8 Hb_000735_140 0.1309254545 - - 3-glucanase family protein [Populus trichocarpa]
9 Hb_000087_100 0.1372044043 - - PREDICTED: cellulose synthase-like protein D3 [Jatropha curcas]
10 Hb_004724_330 0.1377753256 - - Capsanthin/capsorubin synthase, chloroplast precursor, putative [Ricinus communis]
11 Hb_000069_780 0.1387729349 - - atpob1, putative [Ricinus communis]
12 Hb_000103_420 0.1406136911 - - PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type [Populus euphratica]
13 Hb_008248_020 0.1417672545 transcription factor TF Family: DBB zinc finger protein, putative [Ricinus communis]
14 Hb_023344_110 0.1444124685 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 [Jatropha curcas]
15 Hb_002875_070 0.1461694764 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
16 Hb_001818_060 0.1470017081 - - PREDICTED: cysteine proteinase inhibitor 5-like [Jatropha curcas]
17 Hb_004631_110 0.1482969541 - - ring finger protein, putative [Ricinus communis]
18 Hb_000056_080 0.1488102442 - - PREDICTED: protein kinase 2B, chloroplastic [Jatropha curcas]
19 Hb_000836_210 0.1525404535 - - hypothetical protein JCGZ_14362 [Jatropha curcas]
20 Hb_003849_190 0.1556353678 - - PREDICTED: uncharacterized protein LOC105644700 [Jatropha curcas]

Gene co-expression network

sample Hb_000836_600 Hb_000836_600 Hb_001133_010 Hb_001133_010 Hb_000836_600--Hb_001133_010 Hb_004013_020 Hb_004013_020 Hb_000836_600--Hb_004013_020 Hb_000200_170 Hb_000200_170 Hb_000836_600--Hb_000200_170 Hb_143766_030 Hb_143766_030 Hb_000836_600--Hb_143766_030 Hb_002876_250 Hb_002876_250 Hb_000836_600--Hb_002876_250 Hb_002849_070 Hb_002849_070 Hb_000836_600--Hb_002849_070 Hb_006054_030 Hb_006054_030 Hb_001133_010--Hb_006054_030 Hb_001133_010--Hb_000200_170 Hb_001133_010--Hb_143766_030 Hb_002875_070 Hb_002875_070 Hb_001133_010--Hb_002875_070 Hb_000069_780 Hb_000069_780 Hb_001133_010--Hb_000069_780 Hb_000753_120 Hb_000753_120 Hb_004013_020--Hb_000753_120 Hb_000975_370 Hb_000975_370 Hb_004013_020--Hb_000975_370 Hb_000230_470 Hb_000230_470 Hb_004013_020--Hb_000230_470 Hb_000065_090 Hb_000065_090 Hb_004013_020--Hb_000065_090 Hb_001541_160 Hb_001541_160 Hb_004013_020--Hb_001541_160 Hb_000200_170--Hb_002849_070 Hb_000056_080 Hb_000056_080 Hb_000200_170--Hb_000056_080 Hb_004724_330 Hb_004724_330 Hb_000200_170--Hb_004724_330 Hb_000203_270 Hb_000203_270 Hb_000200_170--Hb_000203_270 Hb_000200_170--Hb_143766_030 Hb_001818_060 Hb_001818_060 Hb_000200_170--Hb_001818_060 Hb_002248_120 Hb_002248_120 Hb_143766_030--Hb_002248_120 Hb_003605_220 Hb_003605_220 Hb_143766_030--Hb_003605_220 Hb_000735_140 Hb_000735_140 Hb_143766_030--Hb_000735_140 Hb_023344_110 Hb_023344_110 Hb_143766_030--Hb_023344_110 Hb_143766_030--Hb_000069_780 Hb_000116_210 Hb_000116_210 Hb_002876_250--Hb_000116_210 Hb_000120_160 Hb_000120_160 Hb_002876_250--Hb_000120_160 Hb_000207_290 Hb_000207_290 Hb_002876_250--Hb_000207_290 Hb_000805_230 Hb_000805_230 Hb_002876_250--Hb_000805_230 Hb_000805_190 Hb_000805_190 Hb_002876_250--Hb_000805_190 Hb_002849_070--Hb_000056_080 Hb_002849_070--Hb_000203_270 Hb_002849_070--Hb_000735_140 Hb_033363_010 Hb_033363_010 Hb_002849_070--Hb_033363_010 Hb_002849_070--Hb_001818_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.74586 47.3781 11.6097 37.1766 3.6524 3.00371
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.71356 2.82293 6.61706 10.5606 15.0166

CAGE analysis