Hb_000836_610

Information

Type -
Description -
Location Contig836: 477585-478683
Sequence    

Annotation

kegg
ID tcc:TCM_031380
description Aluminum induced protein with YGL and LRDR motifs
nr
ID NP_001295737.1
description stem-specific protein TSJT1-like [Jatropha curcas]
swissprot
ID P24805
description Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1
trembl
ID D6BRF0
description Stem-specific protein tsjt1, putative OS=Jatropha curcas GN=JCGZ_20962 PE=2 SV=1
Gene Ontology
ID GO:0005634
description stem-specific protein tsjt1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59996: 477543-478853 , PASA_asmbl_59998: 478101-478522
cDNA
(Sanger)
(ID:Location)		 002_G03.ab1: 477555-478688 , 004_L22.ab1: 477549-478683 , 017_L08.ab1: 478052-478828 , 021_E14.ab1: 477553-478640 , 035_K24.ab1: 477549-478665 , 036_K15.ab1: 477549-478571

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000836_610 0.0 - - stem-specific protein TSJT1-like [Jatropha curcas]
2 Hb_002641_050 0.1647041344 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 48 [Jatropha curcas]
3 Hb_068492_010 0.1707786094 - - -
4 Hb_001842_060 0.1786355946 desease resistance Gene Name: ABC_trans_N hypothetical protein JCGZ_10908 [Jatropha curcas]
5 Hb_042083_060 0.181760524 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45780 [Jatropha curcas]
6 Hb_000051_030 0.1822933344 - - PREDICTED: E3 ubiquitin-protein ligase SINAT2-like [Jatropha curcas]
7 Hb_001195_220 0.1876648566 - - sugar transporter, putative [Ricinus communis]
8 Hb_004586_240 0.1890779281 - - PREDICTED: serine/threonine-protein kinase-like protein At1g28390 [Jatropha curcas]
9 Hb_008453_080 0.1903789034 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 6 isoform X2 [Jatropha curcas]
10 Hb_001123_220 0.1907740421 - - -
11 Hb_001318_110 0.192349518 - - PREDICTED: uncharacterized protein LOC105642677 [Jatropha curcas]
12 Hb_004631_080 0.1969891195 - - P3B-ATPase PH1 [Petunia x hybrida]
13 Hb_019863_030 0.1988132851 - - hypothetical protein JCGZ_00393 [Jatropha curcas]
14 Hb_001100_030 0.1993065355 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
15 Hb_004286_030 0.2002200636 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
16 Hb_000363_410 0.2018381787 - - hypothetical protein JCGZ_00955 [Jatropha curcas]
17 Hb_001488_280 0.2040920206 - - hypothetical protein JCGZ_19947 [Jatropha curcas]
18 Hb_000120_310 0.2044124319 - - Gibberellin 3-beta-dioxygenase, putative [Ricinus communis]
19 Hb_005504_030 0.2044280725 - - PREDICTED: somatic embryogenesis receptor kinase 2-like [Pyrus x bretschneideri]
20 Hb_000165_070 0.2063750976 - - hypothetical protein JCGZ_01211 [Jatropha curcas]

Gene co-expression network

sample Hb_000836_610 Hb_000836_610 Hb_002641_050 Hb_002641_050 Hb_000836_610--Hb_002641_050 Hb_068492_010 Hb_068492_010 Hb_000836_610--Hb_068492_010 Hb_001842_060 Hb_001842_060 Hb_000836_610--Hb_001842_060 Hb_042083_060 Hb_042083_060 Hb_000836_610--Hb_042083_060 Hb_000051_030 Hb_000051_030 Hb_000836_610--Hb_000051_030 Hb_001195_220 Hb_001195_220 Hb_000836_610--Hb_001195_220 Hb_001318_110 Hb_001318_110 Hb_002641_050--Hb_001318_110 Hb_004667_040 Hb_004667_040 Hb_002641_050--Hb_004667_040 Hb_025236_020 Hb_025236_020 Hb_002641_050--Hb_025236_020 Hb_013938_010 Hb_013938_010 Hb_002641_050--Hb_013938_010 Hb_002343_020 Hb_002343_020 Hb_002641_050--Hb_002343_020 Hb_184008_010 Hb_184008_010 Hb_002641_050--Hb_184008_010 Hb_029622_020 Hb_029622_020 Hb_068492_010--Hb_029622_020 Hb_068492_010--Hb_002641_050 Hb_068492_010--Hb_000051_030 Hb_008453_080 Hb_008453_080 Hb_068492_010--Hb_008453_080 Hb_019863_030 Hb_019863_030 Hb_068492_010--Hb_019863_030 Hb_002030_170 Hb_002030_170 Hb_001842_060--Hb_002030_170 Hb_002471_140 Hb_002471_140 Hb_001842_060--Hb_002471_140 Hb_002662_090 Hb_002662_090 Hb_001842_060--Hb_002662_090 Hb_000953_040 Hb_000953_040 Hb_001842_060--Hb_000953_040 Hb_004631_080 Hb_004631_080 Hb_001842_060--Hb_004631_080 Hb_000345_340 Hb_000345_340 Hb_001842_060--Hb_000345_340 Hb_009070_030 Hb_009070_030 Hb_042083_060--Hb_009070_030 Hb_008554_090 Hb_008554_090 Hb_042083_060--Hb_008554_090 Hb_010598_010 Hb_010598_010 Hb_042083_060--Hb_010598_010 Hb_002110_060 Hb_002110_060 Hb_042083_060--Hb_002110_060 Hb_004525_110 Hb_004525_110 Hb_042083_060--Hb_004525_110 Hb_001454_290 Hb_001454_290 Hb_042083_060--Hb_001454_290 Hb_000347_020 Hb_000347_020 Hb_000051_030--Hb_000347_020 Hb_004286_030 Hb_004286_030 Hb_000051_030--Hb_004286_030 Hb_000051_030--Hb_029622_020 Hb_000051_030--Hb_002662_090 Hb_000051_030--Hb_001318_110 Hb_000679_110 Hb_000679_110 Hb_001195_220--Hb_000679_110 Hb_007576_140 Hb_007576_140 Hb_001195_220--Hb_007576_140 Hb_003659_010 Hb_003659_010 Hb_001195_220--Hb_003659_010 Hb_001221_580 Hb_001221_580 Hb_001195_220--Hb_001221_580 Hb_000567_090 Hb_000567_090 Hb_001195_220--Hb_000567_090 Hb_129204_020 Hb_129204_020 Hb_001195_220--Hb_129204_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.757 119.338 185.385 59.2947 11.9464 20.4717
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.5456 14.177 4.24076 209.698 16.2417

CAGE analysis