Hb_000836_630

Information

Type -
Description -
Location Contig836: 482422-490706
Sequence    

Annotation

kegg
ID rcu:RCOM_0252870
description WD-repeat protein, putative
nr
ID XP_012084919.1
description PREDICTED: WD repeat-containing protein 44 [Jatropha curcas]
swissprot
ID Q9XSC3
description WD repeat-containing protein 44 OS=Bos taurus GN=WDR44 PE=1 SV=1
trembl
ID A0A067K5C8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20959 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60001: 482307-490660
cDNA
(Sanger)
(ID:Location)		 008_L16.ab1: 482307-482864 , 021_F12.ab1: 482307-482864

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000836_630 0.0 - - PREDICTED: WD repeat-containing protein 44 [Jatropha curcas]
2 Hb_007064_040 0.0825662186 - - hypothetical protein RCOM_0254640 [Ricinus communis]
3 Hb_000761_020 0.0871416333 - - PREDICTED: uncharacterized protein LOC105638198 [Jatropha curcas]
4 Hb_009048_040 0.0988203053 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
5 Hb_003609_040 0.0993062345 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
6 Hb_005754_060 0.1012867337 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002874_070 0.1013998569 - - PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Jatropha curcas]
8 Hb_000042_270 0.1014226181 - - myosin vIII, putative [Ricinus communis]
9 Hb_008453_150 0.1060322292 - - PREDICTED: uncharacterized protein LOC105635307 isoform X2 [Jatropha curcas]
10 Hb_185467_020 0.1090627727 - - Cucumisin precursor, putative [Ricinus communis]
11 Hb_109842_010 0.1096790044 - - PREDICTED: uncharacterized protein LOC105647554 isoform X2 [Jatropha curcas]
12 Hb_000001_020 0.1099359693 - - PREDICTED: homogentisate solanesyltransferase, chloroplastic [Jatropha curcas]
13 Hb_000236_250 0.1108008415 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001584_110 0.1125816645 - - PREDICTED: importin subunit alpha-4 isoform X2 [Jatropha curcas]
15 Hb_022256_040 0.1130727327 - - PREDICTED: probable E3 ubiquitin-protein ligase rbrA isoform X2 [Jatropha curcas]
16 Hb_014720_160 0.1132150064 - - PREDICTED: anthranilate phosphoribosyltransferase, chloroplastic [Jatropha curcas]
17 Hb_000034_140 0.1138073493 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic-like isoform X3 [Jatropha curcas]
18 Hb_000997_210 0.1138681214 - - PREDICTED: protein transport protein sec23-1 [Jatropha curcas]
19 Hb_000436_070 0.1153620097 - - PREDICTED: V-type proton ATPase subunit B 2 [Jatropha curcas]
20 Hb_002182_040 0.1158585197 - - WD-repeat protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000836_630 Hb_000836_630 Hb_007064_040 Hb_007064_040 Hb_000836_630--Hb_007064_040 Hb_000761_020 Hb_000761_020 Hb_000836_630--Hb_000761_020 Hb_009048_040 Hb_009048_040 Hb_000836_630--Hb_009048_040 Hb_003609_040 Hb_003609_040 Hb_000836_630--Hb_003609_040 Hb_005754_060 Hb_005754_060 Hb_000836_630--Hb_005754_060 Hb_002874_070 Hb_002874_070 Hb_000836_630--Hb_002874_070 Hb_007064_040--Hb_000761_020 Hb_001100_050 Hb_001100_050 Hb_007064_040--Hb_001100_050 Hb_006816_390 Hb_006816_390 Hb_007064_040--Hb_006816_390 Hb_000699_140 Hb_000699_140 Hb_007064_040--Hb_000699_140 Hb_116349_160 Hb_116349_160 Hb_007064_040--Hb_116349_160 Hb_000620_010 Hb_000620_010 Hb_000761_020--Hb_000620_010 Hb_000001_020 Hb_000001_020 Hb_000761_020--Hb_000001_020 Hb_000436_070 Hb_000436_070 Hb_000761_020--Hb_000436_070 Hb_001360_040 Hb_001360_040 Hb_000761_020--Hb_001360_040 Hb_009048_040--Hb_005754_060 Hb_004109_090 Hb_004109_090 Hb_009048_040--Hb_004109_090 Hb_003195_070 Hb_003195_070 Hb_009048_040--Hb_003195_070 Hb_005489_110 Hb_005489_110 Hb_009048_040--Hb_005489_110 Hb_000080_190 Hb_000080_190 Hb_009048_040--Hb_000080_190 Hb_002506_020 Hb_002506_020 Hb_009048_040--Hb_002506_020 Hb_003609_040--Hb_000001_020 Hb_007547_010 Hb_007547_010 Hb_003609_040--Hb_007547_010 Hb_000943_070 Hb_000943_070 Hb_003609_040--Hb_000943_070 Hb_000030_010 Hb_000030_010 Hb_003609_040--Hb_000030_010 Hb_000172_370 Hb_000172_370 Hb_003609_040--Hb_000172_370 Hb_003297_030 Hb_003297_030 Hb_003609_040--Hb_003297_030 Hb_071736_010 Hb_071736_010 Hb_005754_060--Hb_071736_010 Hb_005883_050 Hb_005883_050 Hb_005754_060--Hb_005883_050 Hb_000395_170 Hb_000395_170 Hb_005754_060--Hb_000395_170 Hb_000023_140 Hb_000023_140 Hb_005754_060--Hb_000023_140 Hb_001454_210 Hb_001454_210 Hb_005754_060--Hb_001454_210 Hb_001584_110 Hb_001584_110 Hb_002874_070--Hb_001584_110 Hb_004440_100 Hb_004440_100 Hb_002874_070--Hb_004440_100 Hb_185467_020 Hb_185467_020 Hb_002874_070--Hb_185467_020 Hb_002928_060 Hb_002928_060 Hb_002874_070--Hb_002928_060 Hb_022256_040 Hb_022256_040 Hb_002874_070--Hb_022256_040 Hb_001936_050 Hb_001936_050 Hb_002874_070--Hb_001936_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
46.5864 8.0912 15.7971 17.041 43.4233 50.9355
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.5975 19.7552 50.0342 7.72825 12.1274

CAGE analysis