Hb_000836_640

Information

Type -
Description -
Location Contig836: 498620-502274
Sequence    

Annotation

kegg
ID rcu:RCOM_0163950
description hypothetical protein
nr
ID XP_012084918.1
description PREDICTED: uncharacterized protein LOC105644242 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JW17
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20958 PE=4 SV=1
Gene Ontology
ID GO:0010413
description fiber protein fb34

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60006: 498488-499345 , PASA_asmbl_60007: 500384-502350
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000836_640 0.0 - - PREDICTED: uncharacterized protein LOC105644242 [Jatropha curcas]
2 Hb_001477_050 0.0442628669 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
3 Hb_000776_090 0.0448082391 - - PREDICTED: COBRA-like protein 4 [Jatropha curcas]
4 Hb_002750_030 0.0478754379 - - PREDICTED: protein IRX15-LIKE-like [Populus euphratica]
5 Hb_000162_010 0.0494015969 - - PREDICTED: dirigent protein 23 [Jatropha curcas]
6 Hb_001307_180 0.0579820614 - - PREDICTED: cellulose synthase A catalytic subunit 4 [UDP-forming] isoform X1 [Jatropha curcas]
7 Hb_005523_030 0.0594211393 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
8 Hb_011912_010 0.06275812 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
9 Hb_050514_030 0.0630106673 - - PREDICTED: protein trichome birefringence-like 34 [Jatropha curcas]
10 Hb_012633_020 0.0640728933 - - laccase, putative [Ricinus communis]
11 Hb_001500_090 0.0647572472 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001051_060 0.0667613838 - - UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative [Ricinus communis]
13 Hb_005056_040 0.0687256094 - - hypothetical protein POPTR_0007s14730g [Populus trichocarpa]
14 Hb_000086_490 0.0715626156 - - cellulose synthase [Populus tomentosa]
15 Hb_024074_030 0.0720614634 - - hypothetical protein CISIN_1g043166mg [Citrus sinensis]
16 Hb_005686_040 0.0762438485 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000037_150 0.0771296109 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
18 Hb_000193_320 0.0780561121 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002660_180 0.0781451593 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001189_080 0.0784003003 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000836_640 Hb_000836_640 Hb_001477_050 Hb_001477_050 Hb_000836_640--Hb_001477_050 Hb_000776_090 Hb_000776_090 Hb_000836_640--Hb_000776_090 Hb_002750_030 Hb_002750_030 Hb_000836_640--Hb_002750_030 Hb_000162_010 Hb_000162_010 Hb_000836_640--Hb_000162_010 Hb_001307_180 Hb_001307_180 Hb_000836_640--Hb_001307_180 Hb_005523_030 Hb_005523_030 Hb_000836_640--Hb_005523_030 Hb_005056_040 Hb_005056_040 Hb_001477_050--Hb_005056_040 Hb_024074_030 Hb_024074_030 Hb_001477_050--Hb_024074_030 Hb_000037_150 Hb_000037_150 Hb_001477_050--Hb_000037_150 Hb_001477_050--Hb_002750_030 Hb_001477_050--Hb_000162_010 Hb_000776_090--Hb_005523_030 Hb_000086_490 Hb_000086_490 Hb_000776_090--Hb_000086_490 Hb_002739_140 Hb_002739_140 Hb_000776_090--Hb_002739_140 Hb_050514_030 Hb_050514_030 Hb_000776_090--Hb_050514_030 Hb_000776_090--Hb_000162_010 Hb_002750_030--Hb_000162_010 Hb_002750_030--Hb_005056_040 Hb_001500_090 Hb_001500_090 Hb_002750_030--Hb_001500_090 Hb_064047_020 Hb_064047_020 Hb_002750_030--Hb_064047_020 Hb_000162_010--Hb_005056_040 Hb_002276_120 Hb_002276_120 Hb_000162_010--Hb_002276_120 Hb_011912_010 Hb_011912_010 Hb_001307_180--Hb_011912_010 Hb_003645_040 Hb_003645_040 Hb_001307_180--Hb_003645_040 Hb_012633_020 Hb_012633_020 Hb_001307_180--Hb_012633_020 Hb_070771_010 Hb_070771_010 Hb_001307_180--Hb_070771_010 Hb_002660_180 Hb_002660_180 Hb_001307_180--Hb_002660_180 Hb_005523_030--Hb_000086_490 Hb_015807_090 Hb_015807_090 Hb_005523_030--Hb_015807_090 Hb_001051_060 Hb_001051_060 Hb_005523_030--Hb_001051_060 Hb_005686_040 Hb_005686_040 Hb_005523_030--Hb_005686_040 Hb_002078_180 Hb_002078_180 Hb_005523_030--Hb_002078_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.49817 4.32663 152.811 0.0730901 0.0600402
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0677419 0 0.801296 86.8824

CAGE analysis