Hb_000840_030

Information

Type transcription factor
Description TF Family: IWS1
Location Contig840: 5622-8983
Sequence    

Annotation

kegg
ID rcu:RCOM_0009800
description hypothetical protein
nr
ID XP_012075305.1
description PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c isoform X2 [Jatropha curcas]
swissprot
ID F4KFC7
description Probable mediator of RNA polymerase II transcription subunit 26c OS=Arabidopsis thaliana GN=MED26C PE=1 SV=1
trembl
ID B9SVQ9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0009800 PE=4 SV=1
Gene Ontology
ID GO:0005634
description transcription elongation factor family isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60065: 5734-8844 , PASA_asmbl_60066: 6078-7833
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000840_030 0.0 transcription factor TF Family: IWS1 PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c isoform X2 [Jatropha curcas]
2 Hb_153112_020 0.0591053573 - - PREDICTED: mediator of RNA polymerase II transcription subunit 22b-like [Jatropha curcas]
3 Hb_000331_080 0.0599757034 - - PREDICTED: UPF0235 protein At5g63440 isoform X1 [Gossypium raimondii]
4 Hb_002030_040 0.062608742 - - hypothetical protein JCGZ_18677 [Jatropha curcas]
5 Hb_005539_350 0.0642098743 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002874_190 0.0682594586 - - proteasome subunit beta type 6,9, putative [Ricinus communis]
7 Hb_006541_030 0.0688629383 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
8 Hb_009773_020 0.0695877736 - - PREDICTED: molybdopterin synthase sulfur carrier subunit [Jatropha curcas]
9 Hb_001269_680 0.0708619297 - - PREDICTED: uncharacterized protein LOC105132670 isoform X2 [Populus euphratica]
10 Hb_165132_010 0.071076321 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
11 Hb_000201_120 0.0711644617 - - ubiquitin-protein ligase 2a [Hevea brasiliensis]
12 Hb_004204_120 0.0746675761 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
13 Hb_004931_090 0.075241128 - - PREDICTED: chromatin modification-related protein MEAF6-like isoform X2 [Jatropha curcas]
14 Hb_004108_230 0.0768132676 - - PREDICTED: 6.7 kDa chloroplast outer envelope membrane protein-like [Jatropha curcas]
15 Hb_002963_010 0.0769621577 - - PREDICTED: autophagy-related protein 18b-like isoform X1 [Jatropha curcas]
16 Hb_004837_140 0.0769929926 - - hypothetical protein PRUPE_ppa012469mg [Prunus persica]
17 Hb_004657_050 0.0773220877 - - PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Jatropha curcas]
18 Hb_118707_030 0.0782672218 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Beta vulgaris subsp. vulgaris]
19 Hb_004934_110 0.0806704935 transcription factor TF Family: HMG hypothetical protein B456_002G115100 [Gossypium raimondii]
20 Hb_000815_040 0.0807636026 transcription factor TF Family: M-type hypothetical protein JCGZ_15623 [Jatropha curcas]

Gene co-expression network

sample Hb_000840_030 Hb_000840_030 Hb_153112_020 Hb_153112_020 Hb_000840_030--Hb_153112_020 Hb_000331_080 Hb_000331_080 Hb_000840_030--Hb_000331_080 Hb_002030_040 Hb_002030_040 Hb_000840_030--Hb_002030_040 Hb_005539_350 Hb_005539_350 Hb_000840_030--Hb_005539_350 Hb_002874_190 Hb_002874_190 Hb_000840_030--Hb_002874_190 Hb_006541_030 Hb_006541_030 Hb_000840_030--Hb_006541_030 Hb_153112_020--Hb_000331_080 Hb_004994_100 Hb_004994_100 Hb_153112_020--Hb_004994_100 Hb_011224_110 Hb_011224_110 Hb_153112_020--Hb_011224_110 Hb_003207_190 Hb_003207_190 Hb_153112_020--Hb_003207_190 Hb_009838_080 Hb_009838_080 Hb_153112_020--Hb_009838_080 Hb_000331_080--Hb_004994_100 Hb_008878_030 Hb_008878_030 Hb_000331_080--Hb_008878_030 Hb_002686_020 Hb_002686_020 Hb_000331_080--Hb_002686_020 Hb_012725_050 Hb_012725_050 Hb_000331_080--Hb_012725_050 Hb_009773_020 Hb_009773_020 Hb_002030_040--Hb_009773_020 Hb_004204_120 Hb_004204_120 Hb_002030_040--Hb_004204_120 Hb_065525_020 Hb_065525_020 Hb_002030_040--Hb_065525_020 Hb_002105_090 Hb_002105_090 Hb_002030_040--Hb_002105_090 Hb_004324_310 Hb_004324_310 Hb_002030_040--Hb_004324_310 Hb_001269_680 Hb_001269_680 Hb_005539_350--Hb_001269_680 Hb_005539_350--Hb_006541_030 Hb_007380_070 Hb_007380_070 Hb_005539_350--Hb_007380_070 Hb_005539_350--Hb_002874_190 Hb_002007_060 Hb_002007_060 Hb_005539_350--Hb_002007_060 Hb_003055_120 Hb_003055_120 Hb_002874_190--Hb_003055_120 Hb_165132_010 Hb_165132_010 Hb_002874_190--Hb_165132_010 Hb_003687_110 Hb_003687_110 Hb_002874_190--Hb_003687_110 Hb_002874_190--Hb_006541_030 Hb_006541_030--Hb_007380_070 Hb_000243_030 Hb_000243_030 Hb_006541_030--Hb_000243_030 Hb_000398_180 Hb_000398_180 Hb_006541_030--Hb_000398_180 Hb_000529_190 Hb_000529_190 Hb_006541_030--Hb_000529_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
57.3375 18.3787 24.4693 27.9414 39.2997 53.239
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
81.9865 81.743 60.3886 19.8427 23.9562

CAGE analysis