Hb_000840_040

Information

Type -
Description -
Location Contig840: 11167-22782
Sequence    

Annotation

kegg
ID rcu:RCOM_0009590
description monoxygenase, putative
nr
ID XP_002530077.1
description monoxygenase, putative [Ricinus communis]
swissprot
ID A6T923
description FAD-dependent urate hydroxylase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=hpxO PE=1 SV=1
trembl
ID B9SVQ8
description Monoxygenase, putative OS=Ricinus communis GN=RCOM_0009590 PE=4 SV=1
Gene Ontology
ID GO:0009540
description zeaxanthin chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60067: 11981-12602 , PASA_asmbl_60068: 21176-21377 , PASA_asmbl_60069: 21576-22296
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000840_040 0.0 - - monoxygenase, putative [Ricinus communis]
2 Hb_003185_100 0.1864158036 - - hypothetical protein JCGZ_07188 [Jatropha curcas]
3 Hb_149515_010 0.1867577692 - - multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
4 Hb_000141_010 0.190427375 - - PREDICTED: uncharacterized protein LOC105632253 [Jatropha curcas]
5 Hb_159198_010 0.201864134 - - hypothetical protein VITISV_033829 [Vitis vinifera]
6 Hb_002043_010 0.2137917599 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
7 Hb_001485_010 0.2172992187 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
8 Hb_102011_010 0.2226996217 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
9 Hb_000661_260 0.2227892357 - - PREDICTED: uncharacterized protein LOC105648304 [Jatropha curcas]
10 Hb_002291_020 0.2228510618 - - PREDICTED: glutamate synthase 1 [NADH], chloroplastic isoform X1 [Jatropha curcas]
11 Hb_009296_050 0.223283558 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
12 Hb_005433_060 0.2249866321 - - PREDICTED: putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1C [Jatropha curcas]
13 Hb_000527_070 0.2257500156 transcription factor TF Family: SNF2 PREDICTED: uncharacterized protein LOC105649495 [Jatropha curcas]
14 Hb_012760_110 0.2266774453 - - PREDICTED: methyltransferase-like protein 23 isoform X1 [Jatropha curcas]
15 Hb_012098_170 0.2285092809 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_16874 [Jatropha curcas]
16 Hb_126103_010 0.2319575916 - - Phosphoprotein phosphatase [Theobroma cacao]
17 Hb_000645_240 0.2321738137 - - AMP dependent ligase, putative [Ricinus communis]
18 Hb_012788_010 0.2332454041 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
19 Hb_007919_040 0.2333914434 - - PREDICTED: protein LYK5 [Jatropha curcas]
20 Hb_006718_040 0.2368686556 - - PREDICTED: starch synthase 3, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000840_040 Hb_000840_040 Hb_003185_100 Hb_003185_100 Hb_000840_040--Hb_003185_100 Hb_149515_010 Hb_149515_010 Hb_000840_040--Hb_149515_010 Hb_000141_010 Hb_000141_010 Hb_000840_040--Hb_000141_010 Hb_159198_010 Hb_159198_010 Hb_000840_040--Hb_159198_010 Hb_002043_010 Hb_002043_010 Hb_000840_040--Hb_002043_010 Hb_001485_010 Hb_001485_010 Hb_000840_040--Hb_001485_010 Hb_012760_110 Hb_012760_110 Hb_003185_100--Hb_012760_110 Hb_000527_070 Hb_000527_070 Hb_003185_100--Hb_000527_070 Hb_001230_030 Hb_001230_030 Hb_003185_100--Hb_001230_030 Hb_000340_290 Hb_000340_290 Hb_003185_100--Hb_000340_290 Hb_001616_110 Hb_001616_110 Hb_003185_100--Hb_001616_110 Hb_008145_010 Hb_008145_010 Hb_149515_010--Hb_008145_010 Hb_011909_010 Hb_011909_010 Hb_149515_010--Hb_011909_010 Hb_000649_180 Hb_000649_180 Hb_149515_010--Hb_000649_180 Hb_002291_020 Hb_002291_020 Hb_149515_010--Hb_002291_020 Hb_007919_040 Hb_007919_040 Hb_149515_010--Hb_007919_040 Hb_149515_010--Hb_000141_010 Hb_000141_010--Hb_000527_070 Hb_002218_070 Hb_002218_070 Hb_000141_010--Hb_002218_070 Hb_001410_010 Hb_001410_010 Hb_000141_010--Hb_001410_010 Hb_082683_010 Hb_082683_010 Hb_000141_010--Hb_082683_010 Hb_000141_010--Hb_002291_020 Hb_001091_020 Hb_001091_020 Hb_000141_010--Hb_001091_020 Hb_159198_010--Hb_149515_010 Hb_003517_010 Hb_003517_010 Hb_159198_010--Hb_003517_010 Hb_000067_030 Hb_000067_030 Hb_159198_010--Hb_000067_030 Hb_159198_010--Hb_000141_010 Hb_002740_170 Hb_002740_170 Hb_159198_010--Hb_002740_170 Hb_002110_260 Hb_002110_260 Hb_002043_010--Hb_002110_260 Hb_012565_080 Hb_012565_080 Hb_002043_010--Hb_012565_080 Hb_000384_050 Hb_000384_050 Hb_002043_010--Hb_000384_050 Hb_002524_030 Hb_002524_030 Hb_002043_010--Hb_002524_030 Hb_002827_020 Hb_002827_020 Hb_002043_010--Hb_002827_020 Hb_000036_050 Hb_000036_050 Hb_002043_010--Hb_000036_050 Hb_102011_010 Hb_102011_010 Hb_001485_010--Hb_102011_010 Hb_053125_010 Hb_053125_010 Hb_001485_010--Hb_053125_010 Hb_136880_010 Hb_136880_010 Hb_001485_010--Hb_136880_010 Hb_071160_010 Hb_071160_010 Hb_001485_010--Hb_071160_010 Hb_000233_100 Hb_000233_100 Hb_001485_010--Hb_000233_100 Hb_065500_010 Hb_065500_010 Hb_001485_010--Hb_065500_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.126864 3.11258 0.21464 0.231986 0.265118 0.292899
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.176844 0.328923 0.966358 2.74129 1.85897

CAGE analysis