Hb_000840_080

Information

Type -
Description -
Location Contig840: 81936-85753
Sequence    

Annotation

kegg
ID rcu:RCOM_0009530
description alcohol dehydrogenase, putative (EC:1.1.1.255)
nr
ID XP_012075299.1
description PREDICTED: probable cinnamyl alcohol dehydrogenase 9 [Jatropha curcas]
swissprot
ID P42734
description Probable cinnamyl alcohol dehydrogenase 9 OS=Arabidopsis thaliana GN=CAD9 PE=2 SV=2
trembl
ID A0A067KK00
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09467 PE=3 SV=1
Gene Ontology
ID GO:0008270
description probable cinnamyl alcohol dehydrogenase 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60079: 85420-85571
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000840_080 0.0 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 9 [Jatropha curcas]
2 Hb_007218_050 0.065360217 - - zinc finger protein, putative [Ricinus communis]
3 Hb_006711_030 0.0654778225 - - PREDICTED: rho guanine nucleotide exchange factor 8-like [Jatropha curcas]
4 Hb_002307_140 0.0655645371 transcription factor TF Family: AUX/IAA aux/IAA family protein [Populus trichocarpa]
5 Hb_167188_020 0.0719903635 - - PREDICTED: uncharacterized protein At1g05835 [Jatropha curcas]
6 Hb_000089_170 0.0748231158 - - PREDICTED: uncharacterized protein LOC105134595 [Populus euphratica]
7 Hb_000816_180 0.0762179438 - - PREDICTED: uncharacterized protein LOC105780682 [Gossypium raimondii]
8 Hb_180535_010 0.0791873485 - - -
9 Hb_002893_220 0.0861458599 - - hypothetical protein B456_001G004300 [Gossypium raimondii]
10 Hb_061336_010 0.0890846561 - - conserved hypothetical protein [Ricinus communis]
11 Hb_007576_090 0.0894239085 - - lipid transfer protein precursor [Gossypium herbaceum subsp. africanum]
12 Hb_007044_240 0.0912066421 - - PREDICTED: uncharacterized protein LOC105638704 isoform X1 [Jatropha curcas]
13 Hb_012675_040 0.0962232698 - - PREDICTED: uncharacterized protein LOC105647773 isoform X1 [Jatropha curcas]
14 Hb_004453_160 0.0990636415 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000258_400 0.1029311098 transcription factor TF Family: bHLH transcription regulator, putative [Ricinus communis]
16 Hb_000847_090 0.1040086742 - - PREDICTED: uncharacterized protein LOC105644263 isoform X1 [Jatropha curcas]
17 Hb_002259_120 0.1054466067 - - tonoplast intrinsic protein, putative [Ricinus communis]
18 Hb_072952_010 0.1061336957 - - PREDICTED: GDSL esterase/lipase At5g18430-like [Populus euphratica]
19 Hb_132840_190 0.1068320548 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
20 Hb_005269_020 0.1069381356 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 61-like [Jatropha curcas]

Gene co-expression network

sample Hb_000840_080 Hb_000840_080 Hb_007218_050 Hb_007218_050 Hb_000840_080--Hb_007218_050 Hb_006711_030 Hb_006711_030 Hb_000840_080--Hb_006711_030 Hb_002307_140 Hb_002307_140 Hb_000840_080--Hb_002307_140 Hb_167188_020 Hb_167188_020 Hb_000840_080--Hb_167188_020 Hb_000089_170 Hb_000089_170 Hb_000840_080--Hb_000089_170 Hb_000816_180 Hb_000816_180 Hb_000840_080--Hb_000816_180 Hb_007218_050--Hb_002307_140 Hb_180535_010 Hb_180535_010 Hb_007218_050--Hb_180535_010 Hb_007218_050--Hb_000816_180 Hb_007218_050--Hb_006711_030 Hb_007576_090 Hb_007576_090 Hb_007218_050--Hb_007576_090 Hb_061336_010 Hb_061336_010 Hb_007218_050--Hb_061336_010 Hb_006711_030--Hb_002307_140 Hb_006711_030--Hb_167188_020 Hb_006711_030--Hb_000089_170 Hb_007044_240 Hb_007044_240 Hb_006711_030--Hb_007044_240 Hb_002307_140--Hb_180535_010 Hb_002307_140--Hb_000816_180 Hb_002307_140--Hb_007044_240 Hb_002307_140--Hb_007576_090 Hb_012675_040 Hb_012675_040 Hb_167188_020--Hb_012675_040 Hb_167188_020--Hb_000089_170 Hb_002259_120 Hb_002259_120 Hb_167188_020--Hb_002259_120 Hb_002893_220 Hb_002893_220 Hb_167188_020--Hb_002893_220 Hb_167188_020--Hb_002307_140 Hb_000089_170--Hb_002307_140 Hb_000089_170--Hb_007218_050 Hb_000089_170--Hb_012675_040 Hb_132840_190 Hb_132840_190 Hb_000089_170--Hb_132840_190 Hb_000816_180--Hb_180535_010 Hb_000816_180--Hb_061336_010 Hb_000816_180--Hb_007576_090 Hb_072952_010 Hb_072952_010 Hb_000816_180--Hb_072952_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0150103 0 1.1025 0.551023 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.392905

CAGE analysis