Hb_000840_180

Information

Type -
Description -
Location Contig840: 121776-124735
Sequence    

Annotation

kegg
ID rcu:RCOM_1731930
description transcription regulator, putative
nr
ID NP_001294892.1
description protein BOLA2 [Jatropha curcas]
swissprot
ID Q9FIC3
description Protein BOLA2 OS=Arabidopsis thaliana GN=BOLA2 PE=1 SV=1
trembl
ID D6BR62
description Putative transcription regulator OS=Jatropha curcas GN=JCGZ_09488 PE=2 SV=1
Gene Ontology
ID GO:0006301
description uncharacterized bola-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60082: 121775-124727
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000840_180 0.0 - - protein BOLA2 [Jatropha curcas]
2 Hb_000169_040 0.0616766136 - - PREDICTED: stress response protein nst1-like [Jatropha curcas]
3 Hb_004127_020 0.0683094338 - - PREDICTED: probable RNA 3'-terminal phosphate cyclase-like protein isoform X1 [Populus euphratica]
4 Hb_002798_020 0.0704045392 - - PREDICTED: uncharacterized protein LOC105647735 [Jatropha curcas]
5 Hb_004459_040 0.0721684748 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
6 Hb_026053_020 0.0759983167 - - PREDICTED: uncharacterized protein LOC105643718 [Jatropha curcas]
7 Hb_000996_140 0.0774409796 - - PREDICTED: EKC/KEOPS complex subunit Tprkb [Jatropha curcas]
8 Hb_001279_080 0.0777525121 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105140180 isoform X1 [Populus euphratica]
9 Hb_018133_020 0.078479797 - - transporter, putative [Ricinus communis]
10 Hb_002843_140 0.0799161449 - - hypothetical protein JCGZ_20933 [Jatropha curcas]
11 Hb_007576_170 0.0833709844 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000265_050 0.0836372983 - - hypothetical protein CISIN_1g033530mg [Citrus sinensis]
13 Hb_007441_330 0.084081288 - - PREDICTED: acyl carrier protein 1, mitochondrial [Jatropha curcas]
14 Hb_003226_100 0.0877458299 - - PREDICTED: 60S ribosomal protein L18-2 [Jatropha curcas]
15 Hb_004846_090 0.0898659442 transcription factor TF Family: HMG HMG-box DNA-binding family protein isoform 1 [Theobroma cacao]
16 Hb_007760_040 0.0899157558 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105630457 [Jatropha curcas]
17 Hb_033153_060 0.0904699407 - - Transcription elongation factor, putative [Ricinus communis]
18 Hb_000920_110 0.092353523 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
19 Hb_000005_090 0.093436012 - - hypothetical protein CICLE_v10029644mg [Citrus clementina]
20 Hb_004143_150 0.0935347143 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X6 [Jatropha curcas]

Gene co-expression network

sample Hb_000840_180 Hb_000840_180 Hb_000169_040 Hb_000169_040 Hb_000840_180--Hb_000169_040 Hb_004127_020 Hb_004127_020 Hb_000840_180--Hb_004127_020 Hb_002798_020 Hb_002798_020 Hb_000840_180--Hb_002798_020 Hb_004459_040 Hb_004459_040 Hb_000840_180--Hb_004459_040 Hb_026053_020 Hb_026053_020 Hb_000840_180--Hb_026053_020 Hb_000996_140 Hb_000996_140 Hb_000840_180--Hb_000996_140 Hb_002056_050 Hb_002056_050 Hb_000169_040--Hb_002056_050 Hb_000169_040--Hb_002798_020 Hb_003540_240 Hb_003540_240 Hb_000169_040--Hb_003540_240 Hb_007220_010 Hb_007220_010 Hb_000169_040--Hb_007220_010 Hb_000169_040--Hb_004127_020 Hb_000479_090 Hb_000479_090 Hb_004127_020--Hb_000479_090 Hb_004143_150 Hb_004143_150 Hb_004127_020--Hb_004143_150 Hb_000265_050 Hb_000265_050 Hb_004127_020--Hb_000265_050 Hb_004899_370 Hb_004899_370 Hb_004127_020--Hb_004899_370 Hb_004127_020--Hb_002798_020 Hb_007065_010 Hb_007065_010 Hb_002798_020--Hb_007065_010 Hb_007576_170 Hb_007576_170 Hb_002798_020--Hb_007576_170 Hb_002798_020--Hb_000265_050 Hb_003226_100 Hb_003226_100 Hb_002798_020--Hb_003226_100 Hb_002798_020--Hb_002056_050 Hb_033153_060 Hb_033153_060 Hb_004459_040--Hb_033153_060 Hb_004459_040--Hb_007576_170 Hb_000680_140 Hb_000680_140 Hb_004459_040--Hb_000680_140 Hb_006541_010 Hb_006541_010 Hb_004459_040--Hb_006541_010 Hb_002687_170 Hb_002687_170 Hb_004459_040--Hb_002687_170 Hb_000224_140 Hb_000224_140 Hb_004459_040--Hb_000224_140 Hb_131181_010 Hb_131181_010 Hb_026053_020--Hb_131181_010 Hb_000189_240 Hb_000189_240 Hb_026053_020--Hb_000189_240 Hb_008071_020 Hb_008071_020 Hb_026053_020--Hb_008071_020 Hb_026053_020--Hb_000996_140 Hb_018133_020 Hb_018133_020 Hb_026053_020--Hb_018133_020 Hb_001141_140 Hb_001141_140 Hb_026053_020--Hb_001141_140 Hb_007441_330 Hb_007441_330 Hb_000996_140--Hb_007441_330 Hb_010175_040 Hb_010175_040 Hb_000996_140--Hb_010175_040 Hb_000996_140--Hb_003226_100 Hb_002768_030 Hb_002768_030 Hb_000996_140--Hb_002768_030 Hb_003018_010 Hb_003018_010 Hb_000996_140--Hb_003018_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
64.5277 31.3841 57.81 74.1464 49.3556 49.6524
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
123.04 216.861 80.6295 42.7681 81.5497

CAGE analysis