Hb_000840_200

Information

Type -
Description -
Location Contig840: 130365-133308
Sequence    

Annotation

kegg
ID pop:POPTR_0001s15330g
description hypothetical protein
nr
ID XP_012088039.1
description PREDICTED: carbamoyl-phosphate synthase small chain, chloroplastic-like [Jatropha curcas]
swissprot
ID Q9LVW7
description Carbamoyl-phosphate synthase small chain, chloroplastic OS=Arabidopsis thaliana GN=CARA PE=1 SV=1
trembl
ID A0A067JKI5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26603 PE=3 SV=1
Gene Ontology
ID GO:0005951
description carbamoyl-phosphate synthase small chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60084: 129663-133432
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000840_200 0.0 - - PREDICTED: carbamoyl-phosphate synthase small chain, chloroplastic-like [Jatropha curcas]
2 Hb_002303_020 0.0595315932 - - PREDICTED: lysine--tRNA ligase-like [Gossypium raimondii]
3 Hb_002272_270 0.0613151468 - - hypothetical protein POPTR_0013s02780g [Populus trichocarpa]
4 Hb_003878_090 0.0688702653 - - PREDICTED: polynucleotide 3'-phosphatase ZDP [Jatropha curcas]
5 Hb_157023_020 0.0710742243 - - nucleic acid binding protein, putative [Ricinus communis]
6 Hb_000069_720 0.0712032087 - - PREDICTED: exosome complex component RRP41-like [Jatropha curcas]
7 Hb_015675_040 0.0749245198 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
8 Hb_189216_020 0.0764039637 - - PREDICTED: translin [Jatropha curcas]
9 Hb_007472_070 0.0780354867 - - cir, putative [Ricinus communis]
10 Hb_000087_070 0.0799089888 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
11 Hb_005288_130 0.0800984581 - - protein with unknown function [Ricinus communis]
12 Hb_163175_010 0.0833943006 - - hypothetical protein CISIN_1g036035mg, partial [Citrus sinensis]
13 Hb_000699_150 0.0834941971 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
14 Hb_003647_140 0.0841548171 - - PREDICTED: uncharacterized protein LOC105646673 [Jatropha curcas]
15 Hb_003878_150 0.0847145712 - - PREDICTED: GPI mannosyltransferase 3 [Jatropha curcas]
16 Hb_000080_130 0.0850063415 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
17 Hb_000179_270 0.086412396 - - hypothetical protein JCGZ_07444 [Jatropha curcas]
18 Hb_000110_250 0.0875152685 - - PREDICTED: homologous-pairing protein 2 homolog [Jatropha curcas]
19 Hb_008616_050 0.0880437072 - - PREDICTED: putative deoxyribonuclease TATDN1 [Jatropha curcas]
20 Hb_004545_110 0.0881294179 - - DHHC-type zinc finger family protein isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_000840_200 Hb_000840_200 Hb_002303_020 Hb_002303_020 Hb_000840_200--Hb_002303_020 Hb_002272_270 Hb_002272_270 Hb_000840_200--Hb_002272_270 Hb_003878_090 Hb_003878_090 Hb_000840_200--Hb_003878_090 Hb_157023_020 Hb_157023_020 Hb_000840_200--Hb_157023_020 Hb_000069_720 Hb_000069_720 Hb_000840_200--Hb_000069_720 Hb_015675_040 Hb_015675_040 Hb_000840_200--Hb_015675_040 Hb_002534_100 Hb_002534_100 Hb_002303_020--Hb_002534_100 Hb_004712_210 Hb_004712_210 Hb_002303_020--Hb_004712_210 Hb_001728_040 Hb_001728_040 Hb_002303_020--Hb_001728_040 Hb_044653_040 Hb_044653_040 Hb_002303_020--Hb_044653_040 Hb_002303_020--Hb_015675_040 Hb_000179_270 Hb_000179_270 Hb_002272_270--Hb_000179_270 Hb_000087_070 Hb_000087_070 Hb_002272_270--Hb_000087_070 Hb_002272_270--Hb_015675_040 Hb_005288_130 Hb_005288_130 Hb_002272_270--Hb_005288_130 Hb_002272_270--Hb_157023_020 Hb_000976_120 Hb_000976_120 Hb_003878_090--Hb_000976_120 Hb_003861_060 Hb_003861_060 Hb_003878_090--Hb_003861_060 Hb_003878_090--Hb_000069_720 Hb_014834_150 Hb_014834_150 Hb_003878_090--Hb_014834_150 Hb_133702_010 Hb_133702_010 Hb_003878_090--Hb_133702_010 Hb_002572_020 Hb_002572_020 Hb_157023_020--Hb_002572_020 Hb_073973_090 Hb_073973_090 Hb_157023_020--Hb_073973_090 Hb_000375_390 Hb_000375_390 Hb_157023_020--Hb_000375_390 Hb_000023_260 Hb_000023_260 Hb_157023_020--Hb_000023_260 Hb_000603_160 Hb_000603_160 Hb_157023_020--Hb_000603_160 Hb_001301_110 Hb_001301_110 Hb_000069_720--Hb_001301_110 Hb_004157_050 Hb_004157_050 Hb_000069_720--Hb_004157_050 Hb_003678_020 Hb_003678_020 Hb_000069_720--Hb_003678_020 Hb_000167_010 Hb_000167_010 Hb_000069_720--Hb_000167_010 Hb_000080_130 Hb_000080_130 Hb_015675_040--Hb_000080_130 Hb_158530_020 Hb_158530_020 Hb_015675_040--Hb_158530_020 Hb_005976_080 Hb_005976_080 Hb_015675_040--Hb_005976_080 Hb_011224_050 Hb_011224_050 Hb_015675_040--Hb_011224_050 Hb_000185_220 Hb_000185_220 Hb_015675_040--Hb_000185_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.0434 12.3579 18.9755 20.9785 9.18528 13.1553
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.0111 25.3925 9.97332 16.4712 21.2664

CAGE analysis