Hb_000840_210

Information

Type -
Description -
Location Contig840: 135934-147752
Sequence    

Annotation

kegg
ID cput:CONPUDRAFT_72311
description actin actin-like protein
nr
ID XP_007767488.1
description actin actin-like protein [Coniophora puteana RWD-64-598 SS2]
swissprot
ID P53492
description Actin-7 OS=Arabidopsis thaliana GN=ACT7 PE=1 SV=1
trembl
ID H2ZUX4
description Uncharacterized protein OS=Latimeria chalumnae GN=LOC102352149 PE=3 SV=1
Gene Ontology
ID GO:0005618
description actin

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60085: 136027-145763 , PASA_asmbl_60086: 136027-138886 , PASA_asmbl_60087: 142856-145763 , PASA_asmbl_60088: 135951-145763 , PASA_asmbl_60089: 138335-138662
cDNA
(Sanger)
(ID:Location)		 006_E04.ab1: 143918-145763 , 007_C16.ab1: 137062-138883 , 012_E06.ab1: 137534-138881 , 017_N12.ab1: 137117-138886 , 020_C06.ab1: 136244-137136 , 020_J12.ab1: 143931-145755 , 024_I09.ab1: 144112-145755 , 033_F11.ab1: 137113-138886 , 037_B02.ab1: 137049-138883 , 038_L20.ab1: 137065-138886 , 040_I06.ab1: 143965-145755 , 040_L09.ab1: 144003-145755 , 040_O20.ab1: 137081-138883 , 044_E09.ab1: 137042-138883 , 048_L01.ab1: 137070-138886

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000840_210 0.0 - - actin actin-like protein [Coniophora puteana RWD-64-598 SS2]
2 Hb_002411_200 0.0822310534 - - conserved hypothetical protein [Ricinus communis]
3 Hb_020178_070 0.0833722153 - - Protein Z, putative [Ricinus communis]
4 Hb_001329_300 0.0859264074 - - PREDICTED: L-cysteine desulfhydrase [Jatropha curcas]
5 Hb_183086_060 0.0887896725 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
6 Hb_071736_020 0.0898843767 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
7 Hb_001248_130 0.0938807139 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
8 Hb_000174_070 0.0942213153 - - PREDICTED: CMP-sialic acid transporter 2-like isoform X2 [Jatropha curcas]
9 Hb_000115_060 0.0942213335 - - PREDICTED: uncharacterized protein LOC103341483 [Prunus mume]
10 Hb_000567_260 0.0967863595 - - BnaA09g41440D [Brassica napus]
11 Hb_001051_100 0.0975282781 transcription factor TF Family: ARF Auxin response factor, putative [Ricinus communis]
12 Hb_004724_420 0.0981397996 - - fucose synthetase, putative [Ricinus communis]
13 Hb_000049_120 0.1003582215 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 [Jatropha curcas]
14 Hb_002527_070 0.1025721519 - - axonemal dynein light chain, putative [Ricinus communis]
15 Hb_008066_010 0.1039883952 - - PREDICTED: translation initiation factor eIF-2B subunit alpha-like [Jatropha curcas]
16 Hb_000614_230 0.1041728009 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
17 Hb_001366_200 0.1044964576 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000110_160 0.1051719816 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002006_090 0.1077568819 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50990 [Jatropha curcas]
20 Hb_061802_020 0.1077974971 - - zinc finger family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000840_210 Hb_000840_210 Hb_002411_200 Hb_002411_200 Hb_000840_210--Hb_002411_200 Hb_020178_070 Hb_020178_070 Hb_000840_210--Hb_020178_070 Hb_001329_300 Hb_001329_300 Hb_000840_210--Hb_001329_300 Hb_183086_060 Hb_183086_060 Hb_000840_210--Hb_183086_060 Hb_071736_020 Hb_071736_020 Hb_000840_210--Hb_071736_020 Hb_001248_130 Hb_001248_130 Hb_000840_210--Hb_001248_130 Hb_021650_030 Hb_021650_030 Hb_002411_200--Hb_021650_030 Hb_000086_570 Hb_000086_570 Hb_002411_200--Hb_000086_570 Hb_000091_090 Hb_000091_090 Hb_002411_200--Hb_000091_090 Hb_014720_080 Hb_014720_080 Hb_002411_200--Hb_014720_080 Hb_001881_020 Hb_001881_020 Hb_002411_200--Hb_001881_020 Hb_002411_200--Hb_020178_070 Hb_020178_070--Hb_001248_130 Hb_000567_260 Hb_000567_260 Hb_020178_070--Hb_000567_260 Hb_001671_020 Hb_001671_020 Hb_020178_070--Hb_001671_020 Hb_020178_070--Hb_001881_020 Hb_020178_070--Hb_021650_030 Hb_000110_160 Hb_000110_160 Hb_001329_300--Hb_000110_160 Hb_001329_300--Hb_000567_260 Hb_002006_090 Hb_002006_090 Hb_001329_300--Hb_002006_090 Hb_000614_230 Hb_000614_230 Hb_001329_300--Hb_000614_230 Hb_008066_010 Hb_008066_010 Hb_001329_300--Hb_008066_010 Hb_008695_210 Hb_008695_210 Hb_001329_300--Hb_008695_210 Hb_004109_190 Hb_004109_190 Hb_183086_060--Hb_004109_190 Hb_004724_420 Hb_004724_420 Hb_183086_060--Hb_004724_420 Hb_000029_020 Hb_000029_020 Hb_183086_060--Hb_000029_020 Hb_002687_110 Hb_002687_110 Hb_183086_060--Hb_002687_110 Hb_183086_060--Hb_001248_130 Hb_000205_270 Hb_000205_270 Hb_183086_060--Hb_000205_270 Hb_002078_450 Hb_002078_450 Hb_071736_020--Hb_002078_450 Hb_001718_100 Hb_001718_100 Hb_071736_020--Hb_001718_100 Hb_071736_020--Hb_000086_570 Hb_001427_120 Hb_001427_120 Hb_071736_020--Hb_001427_120 Hb_000975_290 Hb_000975_290 Hb_071736_020--Hb_000975_290 Hb_071736_020--Hb_021650_030 Hb_001248_130--Hb_000567_260 Hb_189003_080 Hb_189003_080 Hb_001248_130--Hb_189003_080 Hb_007441_120 Hb_007441_120 Hb_001248_130--Hb_007441_120 Hb_000207_250 Hb_000207_250 Hb_001248_130--Hb_000207_250 Hb_002016_110 Hb_002016_110 Hb_001248_130--Hb_002016_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
501.518 207.645 96.9437 286.09 369.274 633.122
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
944.423 519.787 1073.86 241.175 110.567

CAGE analysis