Hb_000840_220

Information

Type -
Description -
Location Contig840: 167150-167824
Sequence    

Annotation

kegg
ID rcu:RCOM_1731140
description RING-H2 finger protein ATL1L, putative
nr
ID XP_012086051.1
description PREDICTED: RING-H2 finger protein ATL78-like [Jatropha curcas]
swissprot
ID Q6NQG7
description RING-H2 finger protein ATL78 OS=Arabidopsis thaliana GN=ATL78 PE=2 SV=1
trembl
ID A0A067JTG1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22214 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring-h2 finger protein atl78

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60091: 166976-167609
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000840_220 0.0 - - PREDICTED: RING-H2 finger protein ATL78-like [Jatropha curcas]
2 Hb_000563_570 0.0574365158 - - hypothetical protein JCGZ_18895 [Jatropha curcas]
3 Hb_001013_060 0.1038584856 - - -
4 Hb_006890_050 0.1045458454 transcription factor TF Family: TCP PREDICTED: transcription factor CYCLOIDEA [Jatropha curcas]
5 Hb_000705_070 0.117116701 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005900_020 0.1290208772 - - -
7 Hb_003582_010 0.1304135061 - - hypothetical protein EUGRSUZ_B026451, partial [Eucalyptus grandis]
8 Hb_004757_040 0.1311316671 - - -
9 Hb_066350_010 0.1319193347 - - somatic embryogenesis receptor-like kinase 4, partial [Rosa hybrid cultivar]
10 Hb_008385_010 0.1368814627 - - sulfate transporter, putative [Ricinus communis]
11 Hb_001255_030 0.1384967072 - - PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840, partial [Sesamum indicum]
12 Hb_001318_180 0.1452224972 - - PREDICTED: protein NIM1-INTERACTING 1 [Jatropha curcas]
13 Hb_001675_260 0.1452664888 - - nitrate transporter, putative [Ricinus communis]
14 Hb_003939_090 0.1488279088 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
15 Hb_005054_010 0.1508236428 - - amino acid transporter, putative [Ricinus communis]
16 Hb_000203_150 0.1526276063 - - PREDICTED: uncharacterized protein LOC105116038 [Populus euphratica]
17 Hb_021443_020 0.1533197401 - - PREDICTED: uncharacterized protein LOC105648569 [Jatropha curcas]
18 Hb_000501_090 0.1536015772 - - -
19 Hb_007885_120 0.1539294712 - - PREDICTED: BON1-associated protein 2-like [Jatropha curcas]
20 Hb_103632_010 0.1545114003 - - triacylglycerol lipase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000840_220 Hb_000840_220 Hb_000563_570 Hb_000563_570 Hb_000840_220--Hb_000563_570 Hb_001013_060 Hb_001013_060 Hb_000840_220--Hb_001013_060 Hb_006890_050 Hb_006890_050 Hb_000840_220--Hb_006890_050 Hb_000705_070 Hb_000705_070 Hb_000840_220--Hb_000705_070 Hb_005900_020 Hb_005900_020 Hb_000840_220--Hb_005900_020 Hb_003582_010 Hb_003582_010 Hb_000840_220--Hb_003582_010 Hb_000563_570--Hb_001013_060 Hb_000563_570--Hb_006890_050 Hb_000563_570--Hb_000705_070 Hb_012553_030 Hb_012553_030 Hb_000563_570--Hb_012553_030 Hb_001775_060 Hb_001775_060 Hb_000563_570--Hb_001775_060 Hb_000203_150 Hb_000203_150 Hb_001013_060--Hb_000203_150 Hb_001610_060 Hb_001610_060 Hb_001013_060--Hb_001610_060 Hb_000720_060 Hb_000720_060 Hb_001013_060--Hb_000720_060 Hb_001013_060--Hb_003582_010 Hb_002639_120 Hb_002639_120 Hb_006890_050--Hb_002639_120 Hb_007885_120 Hb_007885_120 Hb_006890_050--Hb_007885_120 Hb_006816_540 Hb_006816_540 Hb_006890_050--Hb_006816_540 Hb_000702_040 Hb_000702_040 Hb_006890_050--Hb_000702_040 Hb_001227_010 Hb_001227_010 Hb_006890_050--Hb_001227_010 Hb_001322_010 Hb_001322_010 Hb_000705_070--Hb_001322_010 Hb_000860_030 Hb_000860_030 Hb_000705_070--Hb_000860_030 Hb_000638_110 Hb_000638_110 Hb_000705_070--Hb_000638_110 Hb_000705_070--Hb_003582_010 Hb_000705_070--Hb_001775_060 Hb_066350_010 Hb_066350_010 Hb_005900_020--Hb_066350_010 Hb_148914_020 Hb_148914_020 Hb_005900_020--Hb_148914_020 Hb_179118_010 Hb_179118_010 Hb_005900_020--Hb_179118_010 Hb_004590_010 Hb_004590_010 Hb_005900_020--Hb_004590_010 Hb_021443_020 Hb_021443_020 Hb_005900_020--Hb_021443_020 Hb_035006_010 Hb_035006_010 Hb_005900_020--Hb_035006_010 Hb_008385_010 Hb_008385_010 Hb_003582_010--Hb_008385_010 Hb_001013_070 Hb_001013_070 Hb_003582_010--Hb_001013_070 Hb_002511_050 Hb_002511_050 Hb_003582_010--Hb_002511_050 Hb_003582_010--Hb_001322_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 10.7126 0.841528 23.9019 0 0.0326949
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.70023 0.790504

CAGE analysis