Hb_000840_250

Information

Type -
Description -
Location Contig840: 176599-183507
Sequence    

Annotation

kegg
ID pop:POPTR_0001s31730g
description POPTRDRAFT_752918; hypothetical protein
nr
ID XP_012086052.1
description PREDICTED: autophagy-related protein 13 [Jatropha curcas]
swissprot
ID Q6BQ20
description Autophagy-related protein 13 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=ATG13 PE=3 SV=2
trembl
ID A0A067K2U5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22215 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60092: 176670-183443 , PASA_asmbl_60093: 177263-183443
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000840_250 0.0 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
2 Hb_001633_210 0.0552739985 - - PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]
3 Hb_000614_250 0.0569661421 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
4 Hb_000297_010 0.0579116983 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
5 Hb_001014_030 0.0596811787 - - ATP binding protein, putative [Ricinus communis]
6 Hb_000185_030 0.0651497018 - - PREDICTED: arginine-glutamic acid dipeptide repeats protein-like isoform X2 [Jatropha curcas]
7 Hb_000230_390 0.073291046 - - PREDICTED: F-box/kelch-repeat protein At3g23880 [Jatropha curcas]
8 Hb_006615_020 0.0736490108 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM2 [Jatropha curcas]
9 Hb_000710_060 0.0742676326 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
10 Hb_000049_210 0.0805048343 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
11 Hb_002450_020 0.0823448664 - - PREDICTED: probable transcriptional regulator SLK2 [Jatropha curcas]
12 Hb_000866_170 0.0823904036 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_000250_060 0.0825978709 - - PREDICTED: 28S ribosomal protein S29, mitochondrial [Jatropha curcas]
14 Hb_003847_030 0.0835999438 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Jatropha curcas]
15 Hb_008770_030 0.0840539177 - - PREDICTED: MACPF domain-containing protein At4g24290-like [Jatropha curcas]
16 Hb_000245_040 0.0842120146 - - PREDICTED: uncharacterized protein LOC105631550 isoform X2 [Jatropha curcas]
17 Hb_004724_150 0.085382454 - - expressed protein, putative [Ricinus communis]
18 Hb_003371_090 0.0858778059 - - PREDICTED: uncharacterized protein LOC105650336 [Jatropha curcas]
19 Hb_001507_040 0.0859749114 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000890_150 0.0861102454 - - PREDICTED: E3 ubiquitin-protein ligase Topors isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000840_250 Hb_000840_250 Hb_001633_210 Hb_001633_210 Hb_000840_250--Hb_001633_210 Hb_000614_250 Hb_000614_250 Hb_000840_250--Hb_000614_250 Hb_000297_010 Hb_000297_010 Hb_000840_250--Hb_000297_010 Hb_001014_030 Hb_001014_030 Hb_000840_250--Hb_001014_030 Hb_000185_030 Hb_000185_030 Hb_000840_250--Hb_000185_030 Hb_000230_390 Hb_000230_390 Hb_000840_250--Hb_000230_390 Hb_000250_060 Hb_000250_060 Hb_001633_210--Hb_000250_060 Hb_010812_120 Hb_010812_120 Hb_001633_210--Hb_010812_120 Hb_001633_210--Hb_000614_250 Hb_001633_210--Hb_000185_030 Hb_001633_210--Hb_000297_010 Hb_000614_250--Hb_001014_030 Hb_002450_020 Hb_002450_020 Hb_000614_250--Hb_002450_020 Hb_000710_060 Hb_000710_060 Hb_000614_250--Hb_000710_060 Hb_003847_030 Hb_003847_030 Hb_000614_250--Hb_003847_030 Hb_000297_010--Hb_000185_030 Hb_004724_150 Hb_004724_150 Hb_000297_010--Hb_004724_150 Hb_015934_040 Hb_015934_040 Hb_000297_010--Hb_015934_040 Hb_000245_040 Hb_000245_040 Hb_000297_010--Hb_000245_040 Hb_000041_100 Hb_000041_100 Hb_000297_010--Hb_000041_100 Hb_000003_250 Hb_000003_250 Hb_001014_030--Hb_000003_250 Hb_001014_030--Hb_001633_210 Hb_001014_030--Hb_000297_010 Hb_001014_030--Hb_002450_020 Hb_000185_030--Hb_000710_060 Hb_003761_010 Hb_003761_010 Hb_000185_030--Hb_003761_010 Hb_008725_230 Hb_008725_230 Hb_000185_030--Hb_008725_230 Hb_007508_090 Hb_007508_090 Hb_000230_390--Hb_007508_090 Hb_001159_110 Hb_001159_110 Hb_000230_390--Hb_001159_110 Hb_007532_030 Hb_007532_030 Hb_000230_390--Hb_007532_030 Hb_000230_390--Hb_001014_030 Hb_003371_090 Hb_003371_090 Hb_000230_390--Hb_003371_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.7957 21.9829 11.4063 18.3534 12.5845 17.6763
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.282 23.7178 33.4118 22.6186 12.1864

CAGE analysis