Hb_000840_270

Information

Type -
Description -
Location Contig840: 214508-220021
Sequence    

Annotation

kegg
ID rcu:RCOM_1153050
description exonuclease, putative
nr
ID XP_012079580.1
description PREDICTED: small RNA degrading nuclease 1 [Jatropha curcas]
swissprot
ID Q8RXK2
description Small RNA degrading nuclease 3 OS=Arabidopsis thaliana GN=SDN3 PE=1 SV=1
trembl
ID A0A067K6W7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12452 PE=4 SV=1
Gene Ontology
ID GO:0003676
description small rna degrading nuclease 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60095: 214819-219985 , PASA_asmbl_60096: 214848-219985
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000840_270 0.0 - - PREDICTED: small RNA degrading nuclease 1 [Jatropha curcas]
2 Hb_003106_130 0.1138866264 - - PREDICTED: uncharacterized protein LOC105640436 [Jatropha curcas]
3 Hb_000157_030 0.1281467142 - - PREDICTED: cytochrome b5 domain-containing protein RLF [Jatropha curcas]
4 Hb_000025_760 0.131533109 - - -
5 Hb_002235_150 0.1323796204 - - -
6 Hb_002408_010 0.138595403 - - cation-transporting atpase plant, putative [Ricinus communis]
7 Hb_008578_010 0.1402206154 - - 30S ribosomal protein S19, putative [Ricinus communis]
8 Hb_000197_040 0.1408497986 - - AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis]
9 Hb_000270_360 0.1439270403 - - PREDICTED: serine/threonine-protein kinase pakF-like [Jatropha curcas]
10 Hb_073367_010 0.1460049762 - - PREDICTED: origin of replication complex subunit 2 [Jatropha curcas]
11 Hb_015807_010 0.1464689405 - - hypothetical protein POPTR_0001s44430g [Populus trichocarpa]
12 Hb_000098_190 0.1466144802 - - PREDICTED: uncharacterized protein LOC105633343 [Jatropha curcas]
13 Hb_028900_020 0.1468133247 - - unnamed protein product [Coffea canephora]
14 Hb_007632_090 0.1480878739 - - PREDICTED: nicotinamide/nicotinic acid mononucleotide adenylyltransferase isoform X1 [Jatropha curcas]
15 Hb_006816_150 0.1497023762 - - PREDICTED: lon protease homolog 1, mitochondrial [Jatropha curcas]
16 Hb_001758_020 0.1506862319 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001021_230 0.1506904753 - - -
18 Hb_005690_010 0.1518173982 - - PREDICTED: origin recognition complex subunit 2 [Populus euphratica]
19 Hb_002942_020 0.1545727716 - - nucleotide binding protein, putative [Ricinus communis]
20 Hb_033642_020 0.154837629 - - hypothetical protein JCGZ_19094 [Jatropha curcas]

Gene co-expression network

sample Hb_000840_270 Hb_000840_270 Hb_003106_130 Hb_003106_130 Hb_000840_270--Hb_003106_130 Hb_000157_030 Hb_000157_030 Hb_000840_270--Hb_000157_030 Hb_000025_760 Hb_000025_760 Hb_000840_270--Hb_000025_760 Hb_002235_150 Hb_002235_150 Hb_000840_270--Hb_002235_150 Hb_002408_010 Hb_002408_010 Hb_000840_270--Hb_002408_010 Hb_008578_010 Hb_008578_010 Hb_000840_270--Hb_008578_010 Hb_003120_060 Hb_003120_060 Hb_003106_130--Hb_003120_060 Hb_119583_010 Hb_119583_010 Hb_003106_130--Hb_119583_010 Hb_001246_100 Hb_001246_100 Hb_003106_130--Hb_001246_100 Hb_002942_020 Hb_002942_020 Hb_003106_130--Hb_002942_020 Hb_000019_230 Hb_000019_230 Hb_003106_130--Hb_000019_230 Hb_003106_130--Hb_002235_150 Hb_010691_060 Hb_010691_060 Hb_000157_030--Hb_010691_060 Hb_001766_150 Hb_001766_150 Hb_000157_030--Hb_001766_150 Hb_002107_160 Hb_002107_160 Hb_000157_030--Hb_002107_160 Hb_002391_300 Hb_002391_300 Hb_000157_030--Hb_002391_300 Hb_004440_050 Hb_004440_050 Hb_000157_030--Hb_004440_050 Hb_003266_050 Hb_003266_050 Hb_000157_030--Hb_003266_050 Hb_033642_020 Hb_033642_020 Hb_000025_760--Hb_033642_020 Hb_000025_760--Hb_003106_130 Hb_002955_010 Hb_002955_010 Hb_000025_760--Hb_002955_010 Hb_001758_020 Hb_001758_020 Hb_000025_760--Hb_001758_020 Hb_010298_010 Hb_010298_010 Hb_000025_760--Hb_010298_010 Hb_003911_040 Hb_003911_040 Hb_000025_760--Hb_003911_040 Hb_003746_040 Hb_003746_040 Hb_002235_150--Hb_003746_040 Hb_002235_150--Hb_002408_010 Hb_002235_150--Hb_003120_060 Hb_000622_100 Hb_000622_100 Hb_002235_150--Hb_000622_100 Hb_043302_010 Hb_043302_010 Hb_002235_150--Hb_043302_010 Hb_002408_010--Hb_000019_230 Hb_002408_010--Hb_003120_060 Hb_000608_030 Hb_000608_030 Hb_002408_010--Hb_000608_030 Hb_005928_060 Hb_005928_060 Hb_002408_010--Hb_005928_060 Hb_000384_090 Hb_000384_090 Hb_002408_010--Hb_000384_090 Hb_000009_550 Hb_000009_550 Hb_002408_010--Hb_000009_550 Hb_006816_150 Hb_006816_150 Hb_008578_010--Hb_006816_150 Hb_002784_040 Hb_002784_040 Hb_008578_010--Hb_002784_040 Hb_001021_230 Hb_001021_230 Hb_008578_010--Hb_001021_230 Hb_000742_140 Hb_000742_140 Hb_008578_010--Hb_000742_140 Hb_000098_190 Hb_000098_190 Hb_008578_010--Hb_000098_190 Hb_001369_650 Hb_001369_650 Hb_008578_010--Hb_001369_650
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.0358 6.91663 10.0649 4.95843 36.8761 45.507
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.7203 26.9606 8.05177 7.65372 5.72897

CAGE analysis