Hb_000844_060

Information

Type -
Description -
Location Contig844: 80236-80859
Sequence    

Annotation

kegg
ID rcu:RCOM_1592620
description plastoquinol-plastocyanin reductase, putative
nr
ID XP_012071735.1
description PREDICTED: uncharacterized protein LOC105633706 [Jatropha curcas]
swissprot
ID P80883
description Cytochrome b6-f complex subunit 7 (Fragment) OS=Spinacia oleracea GN=petM PE=1 SV=1
trembl
ID A0A067L2T5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04344 PE=3 SV=1
Gene Ontology
ID GO:0009512
description cytochrome b6-f complex subunit 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60181: 80270-81109 , PASA_asmbl_60182: 80357-80949
cDNA
(Sanger)
(ID:Location)		 012_L24.ab1: 80318-81011 , 026_D04.ab1: 80318-81011 , 026_G01.ab1: 80321-81025 , 031_F15.ab1: 80318-80949 , 043_D13.ab1: 80463-80949 , 043_I06.ab1: 80357-80949 , 053_I14.ab1: 80318-81011

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000844_060 0.0 - - PREDICTED: uncharacterized protein LOC105633706 [Jatropha curcas]
2 Hb_003253_030 0.0671950431 - - lysosomal pro-X carboxypeptidase, putative [Ricinus communis]
3 Hb_003622_050 0.0736322653 - - PREDICTED: respiratory burst oxidase homolog protein A-like [Jatropha curcas]
4 Hb_000645_270 0.0857946776 - - PREDICTED: uncharacterized protein LOC105122837 isoform X2 [Populus euphratica]
5 Hb_001999_330 0.0884094033 - - hypothetical protein PRUPE_ppa022262mg, partial [Prunus persica]
6 Hb_031194_020 0.095858725 - - BnaCnng13030D [Brassica napus]
7 Hb_002600_110 0.097566062 - - hypothetical protein POPTR_0004s10540g [Populus trichocarpa]
8 Hb_001146_030 0.1067603198 - - cytochrome P450, putative [Ricinus communis]
9 Hb_009095_020 0.1078683794 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
10 Hb_004113_030 0.1101270191 - - -
11 Hb_001085_200 0.110781609 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 15 [Jatropha curcas]
12 Hb_001053_050 0.1122823947 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Vitis vinifera]
13 Hb_004329_030 0.1123318376 - - hypothetical protein JCGZ_17335 [Jatropha curcas]
14 Hb_002188_150 0.1156348391 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002081_140 0.1169986865 - - conserved hypothetical protein [Ricinus communis]
16 Hb_007101_090 0.1197874738 - - PREDICTED: protein ALTERED XYLOGLUCAN 4 [Jatropha curcas]
17 Hb_183479_030 0.1200778409 - - Photosystem I reaction center subunit V, chloroplast precursor, putative [Ricinus communis]
18 Hb_000336_130 0.1209981555 - - Triacylglycerol lipase 2 precursor, putative [Ricinus communis]
19 Hb_012049_010 0.1216164074 - - hypothetical protein B456_002G055100 [Gossypium raimondii]
20 Hb_026188_010 0.1219179157 - - PREDICTED: tropinone reductase homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000844_060 Hb_000844_060 Hb_003253_030 Hb_003253_030 Hb_000844_060--Hb_003253_030 Hb_003622_050 Hb_003622_050 Hb_000844_060--Hb_003622_050 Hb_000645_270 Hb_000645_270 Hb_000844_060--Hb_000645_270 Hb_001999_330 Hb_001999_330 Hb_000844_060--Hb_001999_330 Hb_031194_020 Hb_031194_020 Hb_000844_060--Hb_031194_020 Hb_002600_110 Hb_002600_110 Hb_000844_060--Hb_002600_110 Hb_004329_030 Hb_004329_030 Hb_003253_030--Hb_004329_030 Hb_003253_030--Hb_003622_050 Hb_001085_200 Hb_001085_200 Hb_003253_030--Hb_001085_200 Hb_002081_140 Hb_002081_140 Hb_003253_030--Hb_002081_140 Hb_003253_030--Hb_002600_110 Hb_003622_050--Hb_000645_270 Hb_003622_050--Hb_031194_020 Hb_001080_290 Hb_001080_290 Hb_003622_050--Hb_001080_290 Hb_003622_050--Hb_002600_110 Hb_002188_150 Hb_002188_150 Hb_003622_050--Hb_002188_150 Hb_000645_270--Hb_031194_020 Hb_007101_090 Hb_007101_090 Hb_000645_270--Hb_007101_090 Hb_003947_020 Hb_003947_020 Hb_000645_270--Hb_003947_020 Hb_052139_010 Hb_052139_010 Hb_000645_270--Hb_052139_010 Hb_009095_020 Hb_009095_020 Hb_000645_270--Hb_009095_020 Hb_000336_130 Hb_000336_130 Hb_001999_330--Hb_000336_130 Hb_001999_330--Hb_007101_090 Hb_002010_010 Hb_002010_010 Hb_001999_330--Hb_002010_010 Hb_001999_330--Hb_000645_270 Hb_001999_330--Hb_009095_020 Hb_031194_020--Hb_052139_010 Hb_000000_090 Hb_000000_090 Hb_031194_020--Hb_000000_090 Hb_031194_020--Hb_007101_090 Hb_183479_030 Hb_183479_030 Hb_002600_110--Hb_183479_030 Hb_000768_080 Hb_000768_080 Hb_002600_110--Hb_000768_080 Hb_048694_010 Hb_048694_010 Hb_002600_110--Hb_048694_010 Hb_001775_010 Hb_001775_010 Hb_002600_110--Hb_001775_010 Hb_002600_110--Hb_001080_290 Hb_002445_020 Hb_002445_020 Hb_002600_110--Hb_002445_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.329978 2.03751 8.21269 0 0.18696
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.50045 51.5668

CAGE analysis