Hb_000847_030

Information

Type -
Description -
Location Contig847: 36925-40528
Sequence    

Annotation

kegg
ID rcu:RCOM_0318000
description aspartyl-tRNA synthetase, putative (EC:6.1.1.22)
nr
ID XP_012085021.1
description PREDICTED: asparagine--tRNA ligase, cytoplasmic 2 [Jatropha curcas]
swissprot
ID Q9SW95
description Asparagine--tRNA ligase, cytoplasmic 2 OS=Arabidopsis thaliana GN=SYNC2 PE=1 SV=2
trembl
ID A0A067LDI0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15123 PE=4 SV=1
Gene Ontology
ID GO:0005737
description asparagine--trna cytoplasmic 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60246: 38854-39661 , PASA_asmbl_60247: 40112-40431
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000847_030 0.0 - - PREDICTED: asparagine--tRNA ligase, cytoplasmic 2 [Jatropha curcas]
2 Hb_005694_120 0.0557929248 - - PREDICTED: calcium-transporting ATPase, endoplasmic reticulum-type [Jatropha curcas]
3 Hb_003018_150 0.0707106213 - - PREDICTED: uncharacterized protein LOC105628869 [Jatropha curcas]
4 Hb_000618_110 0.0789356431 - - hypothetical protein POPTR_0003s09870g [Populus trichocarpa]
5 Hb_000984_160 0.079111447 - - PREDICTED: amino acid permease 6-like isoform X1 [Jatropha curcas]
6 Hb_001946_120 0.0799595585 - - PREDICTED: SPX domain-containing protein 1-like [Jatropha curcas]
7 Hb_001210_060 0.0818759778 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
8 Hb_001541_280 0.0844630769 - - phosphate transporter [Manihot esculenta]
9 Hb_000140_460 0.0847468052 - - PREDICTED: uncharacterized protein LOC105628417 [Jatropha curcas]
10 Hb_005569_010 0.0865867326 - - Heme-binding protein, putative [Ricinus communis]
11 Hb_004835_020 0.0906961619 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
12 Hb_004052_030 0.0929094936 - - PREDICTED: uncharacterized protein LOC105640637 [Jatropha curcas]
13 Hb_002246_030 0.0970013435 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
14 Hb_005914_160 0.0971018289 - - PREDICTED: protein PROTON GRADIENT REGULATION 5, chloroplastic [Jatropha curcas]
15 Hb_003195_080 0.0982129649 - - PREDICTED: cytochrome P450 87A3-like [Jatropha curcas]
16 Hb_006970_030 0.1029056657 - - synaptotagmin, putative [Ricinus communis]
17 Hb_003058_170 0.1031113526 - - PREDICTED: F-box protein At2g26850 isoform X1 [Jatropha curcas]
18 Hb_044478_010 0.1039757871 - - plastoquinol-plastocyanin reductase, putative [Ricinus communis]
19 Hb_022693_010 0.1040269614 - - pectin acetylesterase, putative [Ricinus communis]
20 Hb_005111_040 0.1056245248 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]

Gene co-expression network

sample Hb_000847_030 Hb_000847_030 Hb_005694_120 Hb_005694_120 Hb_000847_030--Hb_005694_120 Hb_003018_150 Hb_003018_150 Hb_000847_030--Hb_003018_150 Hb_000618_110 Hb_000618_110 Hb_000847_030--Hb_000618_110 Hb_000984_160 Hb_000984_160 Hb_000847_030--Hb_000984_160 Hb_001946_120 Hb_001946_120 Hb_000847_030--Hb_001946_120 Hb_001210_060 Hb_001210_060 Hb_000847_030--Hb_001210_060 Hb_005694_120--Hb_001946_120 Hb_001007_070 Hb_001007_070 Hb_005694_120--Hb_001007_070 Hb_005111_040 Hb_005111_040 Hb_005694_120--Hb_005111_040 Hb_044478_010 Hb_044478_010 Hb_005694_120--Hb_044478_010 Hb_005694_120--Hb_000984_160 Hb_005914_160 Hb_005914_160 Hb_003018_150--Hb_005914_160 Hb_003018_150--Hb_001210_060 Hb_003058_170 Hb_003058_170 Hb_003018_150--Hb_003058_170 Hb_020141_030 Hb_020141_030 Hb_003018_150--Hb_020141_030 Hb_003018_150--Hb_000618_110 Hb_004096_210 Hb_004096_210 Hb_000618_110--Hb_004096_210 Hb_000140_460 Hb_000140_460 Hb_000618_110--Hb_000140_460 Hb_006970_030 Hb_006970_030 Hb_000618_110--Hb_006970_030 Hb_000866_020 Hb_000866_020 Hb_000618_110--Hb_000866_020 Hb_009393_130 Hb_009393_130 Hb_000618_110--Hb_009393_130 Hb_005569_010 Hb_005569_010 Hb_000984_160--Hb_005569_010 Hb_131876_010 Hb_131876_010 Hb_000984_160--Hb_131876_010 Hb_004052_030 Hb_004052_030 Hb_000984_160--Hb_004052_030 Hb_069696_020 Hb_069696_020 Hb_000984_160--Hb_069696_020 Hb_000984_160--Hb_001946_120 Hb_153258_040 Hb_153258_040 Hb_001946_120--Hb_153258_040 Hb_001946_120--Hb_001007_070 Hb_001946_120--Hb_044478_010 Hb_000099_120 Hb_000099_120 Hb_001946_120--Hb_000099_120 Hb_002246_030 Hb_002246_030 Hb_001210_060--Hb_002246_030 Hb_000329_440 Hb_000329_440 Hb_001210_060--Hb_000329_440 Hb_027472_060 Hb_027472_060 Hb_001210_060--Hb_027472_060 Hb_000103_130 Hb_000103_130 Hb_001210_060--Hb_000103_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0492284 0.987546 3.90847 3.96598 0.0161201 0.0778513
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.05866 0.107701 0.0292714 0.458561 8.90843

CAGE analysis