Hb_000847_050

Information

Type -
Description -
Location Contig847: 77707-79236
Sequence    

Annotation

kegg
ID rcu:RCOM_0317560
description hypothetical protein
nr
ID XP_012085003.1
description PREDICTED: dCTP pyrophosphatase 1-like [Jatropha curcas]
swissprot
ID Q91VC0
description dCTP pyrophosphatase 1 OS=Rattus norvegicus GN=Dctpp1 PE=2 SV=1
trembl
ID A0A067LA55
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15122 PE=4 SV=1
Gene Ontology
ID GO:0016787
description dctp pyrophosphatase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60250: 77847-79057
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000847_050 0.0 - - PREDICTED: dCTP pyrophosphatase 1-like [Jatropha curcas]
2 Hb_000454_200 0.0849525452 - - PREDICTED: indole-3-acetic acid-induced protein ARG7 [Jatropha curcas]
3 Hb_000411_050 0.0873531657 - - hypothetical protein AMTR_s00066p00166230 [Amborella trichopoda]
4 Hb_002450_180 0.090314114 - - conserved hypothetical protein [Ricinus communis]
5 Hb_006934_020 0.1031194969 - - hypothetical protein POPTR_0004s09051g [Populus trichocarpa]
6 Hb_006634_090 0.1042796033 - - PREDICTED: uncharacterized protein LOC105646581 [Jatropha curcas]
7 Hb_000497_100 0.1087183467 - - respiratory burst oxidase D [Manihot esculenta]
8 Hb_003376_300 0.1105666295 - - Aquaporin PIP2.2, putative [Ricinus communis]
9 Hb_005357_020 0.1129469998 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007625_030 0.1141505057 - - unknown [Medicago truncatula]
11 Hb_004544_090 0.1174223199 - - cytochrome P450, putative [Ricinus communis]
12 Hb_012743_020 0.119335052 - - serine/threonine protein phosphatase, putative [Ricinus communis]
13 Hb_006153_130 0.1197947876 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
14 Hb_001048_070 0.123334397 transcription factor TF Family: HB hypothetical protein POPTR_0007s14590g [Populus trichocarpa]
15 Hb_020285_010 0.1249730891 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3, partial [Pyrus x bretschneideri]
16 Hb_014361_020 0.126211388 - - PREDICTED: probable protein phosphatase 2C 78 [Jatropha curcas]
17 Hb_004166_020 0.1285533017 - - -
18 Hb_000739_160 0.128859268 - - DNA binding protein, putative [Ricinus communis]
19 Hb_001856_160 0.1296599988 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000028_460 0.1307100457 - - hypothetical protein POPTR_0015s05340g [Populus trichocarpa]

Gene co-expression network

sample Hb_000847_050 Hb_000847_050 Hb_000454_200 Hb_000454_200 Hb_000847_050--Hb_000454_200 Hb_000411_050 Hb_000411_050 Hb_000847_050--Hb_000411_050 Hb_002450_180 Hb_002450_180 Hb_000847_050--Hb_002450_180 Hb_006934_020 Hb_006934_020 Hb_000847_050--Hb_006934_020 Hb_006634_090 Hb_006634_090 Hb_000847_050--Hb_006634_090 Hb_000497_100 Hb_000497_100 Hb_000847_050--Hb_000497_100 Hb_000454_200--Hb_002450_180 Hb_003376_300 Hb_003376_300 Hb_000454_200--Hb_003376_300 Hb_005679_120 Hb_005679_120 Hb_000454_200--Hb_005679_120 Hb_000454_200--Hb_000411_050 Hb_001856_160 Hb_001856_160 Hb_000454_200--Hb_001856_160 Hb_000411_050--Hb_002450_180 Hb_002078_250 Hb_002078_250 Hb_000411_050--Hb_002078_250 Hb_004544_090 Hb_004544_090 Hb_000411_050--Hb_004544_090 Hb_000679_260 Hb_000679_260 Hb_000411_050--Hb_000679_260 Hb_000946_050 Hb_000946_050 Hb_002450_180--Hb_000946_050 Hb_002450_180--Hb_006634_090 Hb_002450_180--Hb_003376_300 Hb_000739_160 Hb_000739_160 Hb_006934_020--Hb_000739_160 Hb_002671_060 Hb_002671_060 Hb_006934_020--Hb_002671_060 Hb_006934_020--Hb_006634_090 Hb_001008_110 Hb_001008_110 Hb_006934_020--Hb_001008_110 Hb_004421_010 Hb_004421_010 Hb_006934_020--Hb_004421_010 Hb_006634_090--Hb_000739_160 Hb_010417_100 Hb_010417_100 Hb_006634_090--Hb_010417_100 Hb_000096_210 Hb_000096_210 Hb_006634_090--Hb_000096_210 Hb_064985_010 Hb_064985_010 Hb_006634_090--Hb_064985_010 Hb_020285_010 Hb_020285_010 Hb_000497_100--Hb_020285_010 Hb_001369_070 Hb_001369_070 Hb_000497_100--Hb_001369_070 Hb_000028_460 Hb_000028_460 Hb_000497_100--Hb_000028_460 Hb_007894_030 Hb_007894_030 Hb_000497_100--Hb_007894_030 Hb_038777_010 Hb_038777_010 Hb_000497_100--Hb_038777_010 Hb_131662_010 Hb_131662_010 Hb_000497_100--Hb_131662_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.140397 4.11188 2.40027 4.72827 0.025057 0.0625471
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.07345 1.75595

CAGE analysis