Hb_000847_060

Information

Type -
Description -
Location Contig847: 86469-87026
Sequence    

Annotation

kegg
ID pop:POPTR_0002s25170g
description POPTRDRAFT_553241; YGGT family protein
nr
ID ADJ67177.1
description hypothetical protein [Jatropha curcas]
swissprot
ID -
description -
trembl
ID E2CXG0
description Putative uncharacterized protein OS=Jatropha curcas PE=2 SV=1
Gene Ontology
ID GO:0016020
description yggt family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60251: 86401-87465
cDNA
(Sanger)
(ID:Location)		 046_M21.ab1: 86401-87083

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000847_060 0.0 - - hypothetical protein [Jatropha curcas]
2 Hb_001728_040 0.0694365395 - - Aconitase/3-isopropylmalate dehydratase protein [Theobroma cacao]
3 Hb_000155_160 0.0840396645 - - hypothetical protein POPTR_0011s05880g [Populus trichocarpa]
4 Hb_002239_050 0.084465665 - - PREDICTED: isovaleryl-CoA dehydrogenase, mitochondrial [Jatropha curcas]
5 Hb_000419_020 0.0863083885 - - PREDICTED: aminodeoxychorismate synthase, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_007894_060 0.0885253365 - - PREDICTED: ubiquitin thioesterase OTU1 [Jatropha curcas]
7 Hb_000161_130 0.0889361488 - - PREDICTED: nifU-like protein 2, chloroplastic [Jatropha curcas]
8 Hb_000136_260 0.0905008133 - - 40S ribosomal protein S5A [Hevea brasiliensis]
9 Hb_004781_010 0.0922862236 - - PREDICTED: potassium transporter 11-like [Populus euphratica]
10 Hb_004108_220 0.094187681 - - PREDICTED: mRNA-capping enzyme-like isoform X1 [Jatropha curcas]
11 Hb_002303_020 0.095187694 - - PREDICTED: lysine--tRNA ligase-like [Gossypium raimondii]
12 Hb_000310_020 0.0971251834 - - hypothetical protein JCGZ_20797 [Jatropha curcas]
13 Hb_007928_030 0.0977534485 - - PREDICTED: dual specificity phosphatase Cdc25 [Jatropha curcas]
14 Hb_000069_720 0.0985507998 - - PREDICTED: exosome complex component RRP41-like [Jatropha curcas]
15 Hb_001301_110 0.0989170357 - - PREDICTED: vacuolar protein sorting-associated protein 22 homolog 1 [Jatropha curcas]
16 Hb_000840_200 0.0991846063 - - PREDICTED: carbamoyl-phosphate synthase small chain, chloroplastic-like [Jatropha curcas]
17 Hb_002995_050 0.1010542536 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X2 [Jatropha curcas]
18 Hb_000139_470 0.1014251674 - - Dual specificity protein phosphatase, putative [Ricinus communis]
19 Hb_000136_350 0.1015400653 - - PREDICTED: 40S ribosomal protein S5 [Nomascus leucogenys]
20 Hb_000179_270 0.102210724 - - hypothetical protein JCGZ_07444 [Jatropha curcas]

Gene co-expression network

sample Hb_000847_060 Hb_000847_060 Hb_001728_040 Hb_001728_040 Hb_000847_060--Hb_001728_040 Hb_000155_160 Hb_000155_160 Hb_000847_060--Hb_000155_160 Hb_002239_050 Hb_002239_050 Hb_000847_060--Hb_002239_050 Hb_000419_020 Hb_000419_020 Hb_000847_060--Hb_000419_020 Hb_007894_060 Hb_007894_060 Hb_000847_060--Hb_007894_060 Hb_000161_130 Hb_000161_130 Hb_000847_060--Hb_000161_130 Hb_002303_020 Hb_002303_020 Hb_001728_040--Hb_002303_020 Hb_005653_070 Hb_005653_070 Hb_001728_040--Hb_005653_070 Hb_000723_230 Hb_000723_230 Hb_001728_040--Hb_000723_230 Hb_015057_020 Hb_015057_020 Hb_001728_040--Hb_015057_020 Hb_003376_180 Hb_003376_180 Hb_001728_040--Hb_003376_180 Hb_000155_160--Hb_000419_020 Hb_000085_350 Hb_000085_350 Hb_000155_160--Hb_000085_350 Hb_007747_050 Hb_007747_050 Hb_000155_160--Hb_007747_050 Hb_001863_430 Hb_001863_430 Hb_000155_160--Hb_001863_430 Hb_000327_230 Hb_000327_230 Hb_000155_160--Hb_000327_230 Hb_002239_050--Hb_000419_020 Hb_002239_050--Hb_000155_160 Hb_002631_180 Hb_002631_180 Hb_002239_050--Hb_002631_180 Hb_163256_020 Hb_163256_020 Hb_002239_050--Hb_163256_020 Hb_000465_070 Hb_000465_070 Hb_002239_050--Hb_000465_070 Hb_000419_020--Hb_007747_050 Hb_000136_260 Hb_000136_260 Hb_000419_020--Hb_000136_260 Hb_002811_170 Hb_002811_170 Hb_000419_020--Hb_002811_170 Hb_000946_090 Hb_000946_090 Hb_000419_020--Hb_000946_090 Hb_004586_420 Hb_004586_420 Hb_000419_020--Hb_004586_420 Hb_007928_030 Hb_007928_030 Hb_007894_060--Hb_007928_030 Hb_000538_120 Hb_000538_120 Hb_007894_060--Hb_000538_120 Hb_001301_110 Hb_001301_110 Hb_007894_060--Hb_001301_110 Hb_002301_150 Hb_002301_150 Hb_007894_060--Hb_002301_150 Hb_007894_060--Hb_000136_260 Hb_000069_720 Hb_000069_720 Hb_007894_060--Hb_000069_720 Hb_000310_020 Hb_000310_020 Hb_000161_130--Hb_000310_020 Hb_000505_130 Hb_000505_130 Hb_000161_130--Hb_000505_130 Hb_000221_190 Hb_000221_190 Hb_000161_130--Hb_000221_190 Hb_017987_050 Hb_017987_050 Hb_000161_130--Hb_017987_050 Hb_004324_090 Hb_004324_090 Hb_000161_130--Hb_004324_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.4631 60.2649 52.7002 80.2937 21.6361 42.8428
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
74.5009 123.816 41.1938 71.9621 63.8188

CAGE analysis