Hb_000847_070

Information

Type -
Description -
Location Contig847: 102963-106891
Sequence    

Annotation

kegg
ID pop:POPTR_0002s25200g
description POPTRDRAFT_553243; hypothetical protein
nr
ID XP_011024565.1
description PREDICTED: uncharacterized protein LOC105125699 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9GR76
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s25200g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60252: 102951-107142
cDNA
(Sanger)
(ID:Location)		 053_P08.ab1: 102951-106767

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000847_070 0.0 - - PREDICTED: uncharacterized protein LOC105125699 [Populus euphratica]
2 Hb_004096_170 0.0600887142 - - PREDICTED: uncharacterized protein DDB_G0275933 [Jatropha curcas]
3 Hb_001514_020 0.0630444957 - - PREDICTED: protein DCL, chloroplastic-like [Jatropha curcas]
4 Hb_004502_030 0.0645899199 - - unknown [Populus trichocarpa]
5 Hb_007992_030 0.0676809544 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105646951 [Jatropha curcas]
6 Hb_134226_010 0.0684277623 - - 40S ribosomal protein S21e, putative [Ricinus communis]
7 Hb_006637_060 0.0773048237 - - PREDICTED: uncharacterized protein LOC105649300 [Jatropha curcas]
8 Hb_004813_010 0.0829194502 - - nucleic acid binding protein, putative [Ricinus communis]
9 Hb_001514_200 0.0833098321 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]
10 Hb_000345_560 0.0836097508 - - -
11 Hb_002044_090 0.0845090875 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
12 Hb_001221_230 0.0851352436 - - conserved hypothetical protein [Ricinus communis]
13 Hb_143766_090 0.0860504077 - - 60S ribosomal protein L31B [Hevea brasiliensis]
14 Hb_000284_200 0.0885143761 - - -
15 Hb_003688_100 0.0890615143 - - Uncharacterized protein TCM_002515 [Theobroma cacao]
16 Hb_001623_370 0.0891273184 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000045_130 0.0891799601 - - 60S acidic ribosomal protein P0A [Hevea brasiliensis]
18 Hb_119583_010 0.0899311038 - - 60S ribosomal protein L12A [Hevea brasiliensis]
19 Hb_003605_070 0.0903165972 - - PREDICTED: angio-associated migratory cell protein [Jatropha curcas]
20 Hb_001741_140 0.0906302525 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000847_070 Hb_000847_070 Hb_004096_170 Hb_004096_170 Hb_000847_070--Hb_004096_170 Hb_001514_020 Hb_001514_020 Hb_000847_070--Hb_001514_020 Hb_004502_030 Hb_004502_030 Hb_000847_070--Hb_004502_030 Hb_007992_030 Hb_007992_030 Hb_000847_070--Hb_007992_030 Hb_134226_010 Hb_134226_010 Hb_000847_070--Hb_134226_010 Hb_006637_060 Hb_006637_060 Hb_000847_070--Hb_006637_060 Hb_007441_340 Hb_007441_340 Hb_004096_170--Hb_007441_340 Hb_003453_020 Hb_003453_020 Hb_004096_170--Hb_003453_020 Hb_000172_120 Hb_000172_120 Hb_004096_170--Hb_000172_120 Hb_002044_090 Hb_002044_090 Hb_004096_170--Hb_002044_090 Hb_004813_010 Hb_004813_010 Hb_004096_170--Hb_004813_010 Hb_003688_100 Hb_003688_100 Hb_001514_020--Hb_003688_100 Hb_143766_090 Hb_143766_090 Hb_001514_020--Hb_143766_090 Hb_001514_020--Hb_004502_030 Hb_001514_020--Hb_007992_030 Hb_001623_370 Hb_001623_370 Hb_001514_020--Hb_001623_370 Hb_004502_030--Hb_007992_030 Hb_004502_030--Hb_004096_170 Hb_000345_560 Hb_000345_560 Hb_004502_030--Hb_000345_560 Hb_003633_130 Hb_003633_130 Hb_004502_030--Hb_003633_130 Hb_007992_030--Hb_000345_560 Hb_001493_100 Hb_001493_100 Hb_007992_030--Hb_001493_100 Hb_007992_030--Hb_004813_010 Hb_133271_020 Hb_133271_020 Hb_134226_010--Hb_133271_020 Hb_118977_020 Hb_118977_020 Hb_134226_010--Hb_118977_020 Hb_134226_010--Hb_003688_100 Hb_134226_010--Hb_001514_020 Hb_001221_230 Hb_001221_230 Hb_134226_010--Hb_001221_230 Hb_003638_140 Hb_003638_140 Hb_006637_060--Hb_003638_140 Hb_000176_110 Hb_000176_110 Hb_006637_060--Hb_000176_110 Hb_000003_090 Hb_000003_090 Hb_006637_060--Hb_000003_090 Hb_006637_060--Hb_004502_030 Hb_002681_140 Hb_002681_140 Hb_006637_060--Hb_002681_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
109.927 21.6801 13.5159 13.2662 106.816 106.444
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
72.7979 82.6841 45.1046 21.952 6.68426

CAGE analysis