Hb_000847_080

Information

Type -
Description -
Location Contig847: 108715-123205
Sequence    

Annotation

kegg
ID tcc:TCM_002681
description Gb:AAB97010.1 isoform 1
nr
ID XP_012084969.1
description PREDICTED: HAUS augmin-like complex subunit 3 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LDH6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15118 PE=4 SV=1
Gene Ontology
ID GO:0070652
description haus augmin-like complex subunit 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60254: 108848-110788 , PASA_asmbl_60257: 118269-118531
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000847_080 0.0 - - PREDICTED: HAUS augmin-like complex subunit 3 [Jatropha curcas]
2 Hb_077026_010 0.0566274939 - - PREDICTED: phosphatidylinositol 4-kinase alpha 2 [Jatropha curcas]
3 Hb_000254_100 0.058963797 - - PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Jatropha curcas]
4 Hb_138435_010 0.0623743648 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
5 Hb_002326_110 0.0641474223 - - PREDICTED: uncharacterized protein LOC103320920 [Prunus mume]
6 Hb_001153_210 0.0711958041 - - PREDICTED: uncharacterized protein LOC105645887 isoform X1 [Jatropha curcas]
7 Hb_003186_020 0.0720697685 - - PREDICTED: histone deacetylase 15 isoform X1 [Jatropha curcas]
8 Hb_021943_080 0.0744626638 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X1 [Jatropha curcas]
9 Hb_002942_210 0.0749071053 - - alpha-2,8-sialyltransferase 8b, putative [Ricinus communis]
10 Hb_007007_040 0.076612903 desease resistance Gene Name: ArsA_ATPase arsenical pump-driving atpase, putative [Ricinus communis]
11 Hb_000120_210 0.0772615504 - - PREDICTED: uncharacterized protein LOC105630189 [Jatropha curcas]
12 Hb_032202_080 0.0774003228 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
13 Hb_000238_040 0.0777688929 - - PREDICTED: uncharacterized protein LOC102611758 [Citrus sinensis]
14 Hb_025668_010 0.0779409973 - - unnamed protein product [Coffea canephora]
15 Hb_000130_420 0.0784227858 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
16 Hb_000362_170 0.0789806254 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
17 Hb_002811_270 0.0796184386 - - PREDICTED: peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase [Jatropha curcas]
18 Hb_016777_040 0.080709931 - - PREDICTED: DNA polymerase eta-like [Jatropha curcas]
19 Hb_000803_270 0.0810132923 - - PREDICTED: nuclear cap-binding protein subunit 1 [Jatropha curcas]
20 Hb_000567_070 0.0814117389 - - autophagy protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000847_080 Hb_000847_080 Hb_077026_010 Hb_077026_010 Hb_000847_080--Hb_077026_010 Hb_000254_100 Hb_000254_100 Hb_000847_080--Hb_000254_100 Hb_138435_010 Hb_138435_010 Hb_000847_080--Hb_138435_010 Hb_002326_110 Hb_002326_110 Hb_000847_080--Hb_002326_110 Hb_001153_210 Hb_001153_210 Hb_000847_080--Hb_001153_210 Hb_003186_020 Hb_003186_020 Hb_000847_080--Hb_003186_020 Hb_002874_180 Hb_002874_180 Hb_077026_010--Hb_002874_180 Hb_021943_080 Hb_021943_080 Hb_077026_010--Hb_021943_080 Hb_000120_210 Hb_000120_210 Hb_077026_010--Hb_000120_210 Hb_004096_240 Hb_004096_240 Hb_077026_010--Hb_004096_240 Hb_000663_020 Hb_000663_020 Hb_077026_010--Hb_000663_020 Hb_004109_120 Hb_004109_120 Hb_000254_100--Hb_004109_120 Hb_030414_040 Hb_030414_040 Hb_000254_100--Hb_030414_040 Hb_000567_070 Hb_000567_070 Hb_000254_100--Hb_000567_070 Hb_000254_100--Hb_003186_020 Hb_001824_080 Hb_001824_080 Hb_000254_100--Hb_001824_080 Hb_138435_010--Hb_001153_210 Hb_138435_010--Hb_003186_020 Hb_031284_010 Hb_031284_010 Hb_138435_010--Hb_031284_010 Hb_032202_080 Hb_032202_080 Hb_138435_010--Hb_032202_080 Hb_001226_150 Hb_001226_150 Hb_138435_010--Hb_001226_150 Hb_005649_100 Hb_005649_100 Hb_002326_110--Hb_005649_100 Hb_000085_170 Hb_000085_170 Hb_002326_110--Hb_000085_170 Hb_000317_510 Hb_000317_510 Hb_002326_110--Hb_000317_510 Hb_000373_080 Hb_000373_080 Hb_002326_110--Hb_000373_080 Hb_002909_040 Hb_002909_040 Hb_002326_110--Hb_002909_040 Hb_002986_100 Hb_002986_100 Hb_001153_210--Hb_002986_100 Hb_005867_070 Hb_005867_070 Hb_001153_210--Hb_005867_070 Hb_003861_050 Hb_003861_050 Hb_001153_210--Hb_003861_050 Hb_004020_040 Hb_004020_040 Hb_001153_210--Hb_004020_040 Hb_000339_040 Hb_000339_040 Hb_001153_210--Hb_000339_040 Hb_003186_020--Hb_000373_080 Hb_000457_230 Hb_000457_230 Hb_003186_020--Hb_000457_230 Hb_000175_410 Hb_000175_410 Hb_003186_020--Hb_000175_410 Hb_003186_020--Hb_031284_010 Hb_000214_050 Hb_000214_050 Hb_003186_020--Hb_000214_050 Hb_000115_280 Hb_000115_280 Hb_003186_020--Hb_000115_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.3731 12.2233 26.8462 14.6398 17.1951 11.3598
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.3711 9.59258 7.57137 12.4746 15.4107

CAGE analysis