Hb_000847_140

Information

Type -
Description -
Location Contig847: 200442-201109
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000847_140 0.0 - - -
2 Hb_012305_120 0.095541597 - - PREDICTED: 60S ribosomal protein L29-1-like [Glycine max]
3 Hb_008699_040 0.1421337371 - - -
4 Hb_000039_170 0.1691861955 - - protein MOTHER of FT and TF 1-like [Jatropha curcas]
5 Hb_015978_070 0.1752571436 - - -
6 Hb_004474_010 0.1768852139 - - unnamed protein product [Coffea canephora]
7 Hb_001623_430 0.1795783991 - - PREDICTED: small acidic protein 1 [Jatropha curcas]
8 Hb_075653_020 0.1810309047 - - -
9 Hb_003602_050 0.1817838189 - - zinc binding dehydrogenase, putative [Ricinus communis]
10 Hb_001723_080 0.1825819493 - - hypothetical protein L484_026139 [Morus notabilis]
11 Hb_003349_070 0.1833482893 - - PREDICTED: signal recognition particle 14 kDa protein [Gossypium raimondii]
12 Hb_012395_200 0.184242902 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000454_110 0.1882854451 - - PREDICTED: polyprenol reductase 2-like isoform X3 [Populus euphratica]
14 Hb_030954_020 0.1907688834 - - hypothetical protein RCOM_1330200 [Ricinus communis]
15 Hb_001629_100 0.1917215293 - - PREDICTED: uncharacterized protein LOC100252136 isoform X2 [Vitis vinifera]
16 Hb_080477_060 0.1941211031 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005009_020 0.198611034 - - -
18 Hb_001754_010 0.2005220643 - - translationally controlled tumor protein [Hevea brasiliensis]
19 Hb_000345_430 0.2012621553 - - 40S ribosomal protein S24A [Hevea brasiliensis]
20 Hb_000003_350 0.2031679923 - - hypothetical protein POPTR_1155s00200g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_000847_140 Hb_000847_140 Hb_012305_120 Hb_012305_120 Hb_000847_140--Hb_012305_120 Hb_008699_040 Hb_008699_040 Hb_000847_140--Hb_008699_040 Hb_000039_170 Hb_000039_170 Hb_000847_140--Hb_000039_170 Hb_015978_070 Hb_015978_070 Hb_000847_140--Hb_015978_070 Hb_004474_010 Hb_004474_010 Hb_000847_140--Hb_004474_010 Hb_001623_430 Hb_001623_430 Hb_000847_140--Hb_001623_430 Hb_012305_120--Hb_015978_070 Hb_000345_430 Hb_000345_430 Hb_012305_120--Hb_000345_430 Hb_012305_120--Hb_001623_430 Hb_007520_060 Hb_007520_060 Hb_012305_120--Hb_007520_060 Hb_009659_020 Hb_009659_020 Hb_012305_120--Hb_009659_020 Hb_008699_040--Hb_004474_010 Hb_001723_080 Hb_001723_080 Hb_008699_040--Hb_001723_080 Hb_075653_020 Hb_075653_020 Hb_008699_040--Hb_075653_020 Hb_005539_210 Hb_005539_210 Hb_008699_040--Hb_005539_210 Hb_004680_020 Hb_004680_020 Hb_008699_040--Hb_004680_020 Hb_000454_110 Hb_000454_110 Hb_000039_170--Hb_000454_110 Hb_000039_170--Hb_001723_080 Hb_012395_200 Hb_012395_200 Hb_000039_170--Hb_012395_200 Hb_000039_170--Hb_012305_120 Hb_003349_070 Hb_003349_070 Hb_000039_170--Hb_003349_070 Hb_000367_170 Hb_000367_170 Hb_015978_070--Hb_000367_170 Hb_001575_030 Hb_001575_030 Hb_015978_070--Hb_001575_030 Hb_015978_070--Hb_000345_430 Hb_001610_130 Hb_001610_130 Hb_015978_070--Hb_001610_130 Hb_000419_130 Hb_000419_130 Hb_015978_070--Hb_000419_130 Hb_004474_010--Hb_003349_070 Hb_004635_060 Hb_004635_060 Hb_004474_010--Hb_004635_060 Hb_004223_260 Hb_004223_260 Hb_004474_010--Hb_004223_260 Hb_004474_010--Hb_004680_020 Hb_004474_010--Hb_001723_080 Hb_001623_430--Hb_003349_070 Hb_030954_020 Hb_030954_020 Hb_001623_430--Hb_030954_020 Hb_183086_040 Hb_183086_040 Hb_001623_430--Hb_183086_040 Hb_000780_210 Hb_000780_210 Hb_001623_430--Hb_000780_210 Hb_004333_030 Hb_004333_030 Hb_001623_430--Hb_004333_030 Hb_000922_100 Hb_000922_100 Hb_001623_430--Hb_000922_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.64912 0.168667 0.146259 0.40597 1.08833 11.1899
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.8901 14.393 3.28812 3.36943 0.165257

CAGE analysis