Hb_000849_040

Information

Type -
Description -
Location Contig849: 61664-62167
Sequence    

Annotation

kegg
ID rcu:RCOM_1626870
description transcription factor, putative
nr
ID XP_002527258.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q9SKX1
description Transcription factor IBH1 OS=Arabidopsis thaliana GN=IBH1 PE=1 SV=1
trembl
ID B9SMN9
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1626870 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor ibh1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60284: 61250-62422
cDNA
(Sanger)
(ID:Location)		 026_H03.ab1: 61815-62262

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000849_040 0.0 - - transcription factor, putative [Ricinus communis]
2 Hb_000442_030 0.0583000195 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006787_040 0.0632177967 - - polyadenylate-binding protein, putative [Ricinus communis]
4 Hb_000304_020 0.0802464547 - - beta-1,3-glucanase form RRII Gln 3 [Hevea brasiliensis]
5 Hb_024505_040 0.0884942657 - - homogentisate geranylgeranyl transferase [Hevea brasiliensis]
6 Hb_001606_070 0.0938887696 - - fimbrin, putative [Ricinus communis]
7 Hb_000387_080 0.0965608206 - - PREDICTED: protein IQ-DOMAIN 1 isoform X2 [Jatropha curcas]
8 Hb_001366_220 0.1049012626 - - conserved hypothetical protein [Ricinus communis]
9 Hb_114684_020 0.1063308256 - - beta-1,3-glucanase [Hevea brasiliensis]
10 Hb_001102_010 0.1095178682 - - PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like isoform X2 [Glycine max]
11 Hb_003001_030 0.1121385829 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
12 Hb_000787_070 0.1128970716 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
13 Hb_005245_090 0.1141486835 - - PREDICTED: peroxisomal membrane protein 13 [Jatropha curcas]
14 Hb_000193_230 0.11539217 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
15 Hb_002835_170 0.118082238 - - PREDICTED: uncharacterized protein LOC105640307 [Jatropha curcas]
16 Hb_005016_130 0.118297009 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
17 Hb_000264_190 0.1185173579 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
18 Hb_005779_100 0.119331455 - - DNAJ [Theobroma cacao]
19 Hb_011457_100 0.1209825981 - - ATP binding protein, putative [Ricinus communis]
20 Hb_005000_290 0.1215086424 transcription factor TF Family: HSF hypothetical protein JCGZ_07430 [Jatropha curcas]

Gene co-expression network

sample Hb_000849_040 Hb_000849_040 Hb_000442_030 Hb_000442_030 Hb_000849_040--Hb_000442_030 Hb_006787_040 Hb_006787_040 Hb_000849_040--Hb_006787_040 Hb_000304_020 Hb_000304_020 Hb_000849_040--Hb_000304_020 Hb_024505_040 Hb_024505_040 Hb_000849_040--Hb_024505_040 Hb_001606_070 Hb_001606_070 Hb_000849_040--Hb_001606_070 Hb_000387_080 Hb_000387_080 Hb_000849_040--Hb_000387_080 Hb_000442_030--Hb_006787_040 Hb_000442_030--Hb_024505_040 Hb_000442_030--Hb_000387_080 Hb_000563_540 Hb_000563_540 Hb_000442_030--Hb_000563_540 Hb_001017_090 Hb_001017_090 Hb_000442_030--Hb_001017_090 Hb_000193_230 Hb_000193_230 Hb_006787_040--Hb_000193_230 Hb_006787_040--Hb_000387_080 Hb_001366_220 Hb_001366_220 Hb_006787_040--Hb_001366_220 Hb_001191_100 Hb_001191_100 Hb_006787_040--Hb_001191_100 Hb_114684_020 Hb_114684_020 Hb_000304_020--Hb_114684_020 Hb_000304_020--Hb_001366_220 Hb_031403_010 Hb_031403_010 Hb_000304_020--Hb_031403_010 Hb_000304_020--Hb_006787_040 Hb_005245_090 Hb_005245_090 Hb_000304_020--Hb_005245_090 Hb_001514_180 Hb_001514_180 Hb_024505_040--Hb_001514_180 Hb_000787_070 Hb_000787_070 Hb_024505_040--Hb_000787_070 Hb_005016_130 Hb_005016_130 Hb_024505_040--Hb_005016_130 Hb_000041_070 Hb_000041_070 Hb_024505_040--Hb_000041_070 Hb_005779_100 Hb_005779_100 Hb_001606_070--Hb_005779_100 Hb_003030_080 Hb_003030_080 Hb_001606_070--Hb_003030_080 Hb_000427_110 Hb_000427_110 Hb_001606_070--Hb_000427_110 Hb_001606_070--Hb_006787_040 Hb_000861_040 Hb_000861_040 Hb_001606_070--Hb_000861_040 Hb_003057_120 Hb_003057_120 Hb_000387_080--Hb_003057_120 Hb_000387_080--Hb_001366_220 Hb_000057_060 Hb_000057_060 Hb_000387_080--Hb_000057_060 Hb_010174_120 Hb_010174_120 Hb_000387_080--Hb_010174_120 Hb_011174_070 Hb_011174_070 Hb_000387_080--Hb_011174_070 Hb_006602_020 Hb_006602_020 Hb_000387_080--Hb_006602_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
155.068 7.30659 0.447165 6.36289 144.535 192.849
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
223.878 140.811 219.159 24.6428 6.04206

CAGE analysis