Hb_000849_060

Information

Type -
Description -
Location Contig849: 69242-71208
Sequence    

Annotation

kegg
ID crb:CARUB_v10013629mg
description hypothetical protein
nr
ID XP_010100822.1
description putative sodium-dependent transporter yocS [Morus notabilis]
swissprot
ID Q8RXE8
description Probable sodium/metabolite cotransporter BASS3, chloroplastic OS=Arabidopsis thaliana GN=BASS3 PE=2 SV=1
trembl
ID W9RDR4
description Putative sodium-dependent transporter yocS OS=Morus notabilis GN=L484_015853 PE=4 SV=1
Gene Ontology
ID GO:0016020
description probable sodium metabolite cotransporter chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60286: 71058-71178
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000849_060 0.0 - - putative sodium-dependent transporter yocS [Morus notabilis]
2 Hb_018117_020 0.1336801903 - - PREDICTED: nicotinate phosphoribosyltransferase 1 [Jatropha curcas]
3 Hb_000679_190 0.1934451477 - - PREDICTED: uncharacterized protein LOC105637641 isoform X1 [Jatropha curcas]
4 Hb_015778_030 0.2012702739 - - PREDICTED: probable myosin light chain kinase DDB_G0279831 [Jatropha curcas]
5 Hb_000586_030 0.20339548 - - hypothetical protein OsJ_17572 [Oryza sativa Japonica Group]
6 Hb_044486_030 0.2085999677 - - DMI1, partial [Cycas revoluta]
7 Hb_023827_020 0.2110699749 - - beta-1,3-glucanase 1 [Ziziphus jujuba]
8 Hb_088327_010 0.2188426401 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
9 Hb_000824_050 0.2201804298 - - PREDICTED: nicotinate phosphoribosyltransferase 1 [Jatropha curcas]
10 Hb_001006_220 0.2261622323 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 [Jatropha curcas]
11 Hb_038564_010 0.2264703079 - - PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Jatropha curcas]
12 Hb_003098_080 0.227342572 - - -
13 Hb_001946_310 0.2278265062 - - PREDICTED: probable ethanolamine kinase isoform X2 [Jatropha curcas]
14 Hb_010577_010 0.2283704254 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase-like [Populus euphratica]
15 Hb_003305_020 0.2286564143 - - PREDICTED: AT-hook motif nuclear-localized protein 13-like [Jatropha curcas]
16 Hb_001673_100 0.2291930507 - - PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 [Jatropha curcas]
17 Hb_158163_010 0.231085115 - - protein binding protein, putative [Ricinus communis]
18 Hb_022593_010 0.2344183094 - - PREDICTED: gamma aminobutyrate transaminase 3, chloroplastic [Jatropha curcas]
19 Hb_001142_010 0.2369020919 - - PREDICTED: alcohol dehydrogenase-like 6 [Jatropha curcas]
20 Hb_027760_020 0.2372893767 - - hypothetical protein M569_04462, partial [Genlisea aurea]

Gene co-expression network

sample Hb_000849_060 Hb_000849_060 Hb_018117_020 Hb_018117_020 Hb_000849_060--Hb_018117_020 Hb_000679_190 Hb_000679_190 Hb_000849_060--Hb_000679_190 Hb_015778_030 Hb_015778_030 Hb_000849_060--Hb_015778_030 Hb_000586_030 Hb_000586_030 Hb_000849_060--Hb_000586_030 Hb_044486_030 Hb_044486_030 Hb_000849_060--Hb_044486_030 Hb_023827_020 Hb_023827_020 Hb_000849_060--Hb_023827_020 Hb_018117_020--Hb_000679_190 Hb_000240_100 Hb_000240_100 Hb_018117_020--Hb_000240_100 Hb_018117_020--Hb_015778_030 Hb_038564_010 Hb_038564_010 Hb_018117_020--Hb_038564_010 Hb_005694_020 Hb_005694_020 Hb_018117_020--Hb_005694_020 Hb_001946_310 Hb_001946_310 Hb_000679_190--Hb_001946_310 Hb_000824_050 Hb_000824_050 Hb_000679_190--Hb_000824_050 Hb_135757_020 Hb_135757_020 Hb_000679_190--Hb_135757_020 Hb_000679_190--Hb_000586_030 Hb_001318_050 Hb_001318_050 Hb_000679_190--Hb_001318_050 Hb_003780_020 Hb_003780_020 Hb_000679_190--Hb_003780_020 Hb_015778_030--Hb_023827_020 Hb_000336_230 Hb_000336_230 Hb_015778_030--Hb_000336_230 Hb_006922_090 Hb_006922_090 Hb_015778_030--Hb_006922_090 Hb_000381_110 Hb_000381_110 Hb_015778_030--Hb_000381_110 Hb_003606_060 Hb_003606_060 Hb_000586_030--Hb_003606_060 Hb_000586_030--Hb_038564_010 Hb_000168_010 Hb_000168_010 Hb_000586_030--Hb_000168_010 Hb_000586_030--Hb_003780_020 Hb_012678_010 Hb_012678_010 Hb_000586_030--Hb_012678_010 Hb_001894_070 Hb_001894_070 Hb_000586_030--Hb_001894_070 Hb_009674_010 Hb_009674_010 Hb_044486_030--Hb_009674_010 Hb_166053_010 Hb_166053_010 Hb_044486_030--Hb_166053_010 Hb_004881_030 Hb_004881_030 Hb_044486_030--Hb_004881_030 Hb_091349_010 Hb_091349_010 Hb_044486_030--Hb_091349_010 Hb_010042_020 Hb_010042_020 Hb_044486_030--Hb_010042_020 Hb_033152_070 Hb_033152_070 Hb_044486_030--Hb_033152_070 Hb_023827_020--Hb_000381_110 Hb_100147_010 Hb_100147_010 Hb_023827_020--Hb_100147_010 Hb_001673_100 Hb_001673_100 Hb_023827_020--Hb_001673_100 Hb_023827_020--Hb_000824_050 Hb_005914_140 Hb_005914_140 Hb_023827_020--Hb_005914_140 Hb_003044_080 Hb_003044_080 Hb_023827_020--Hb_003044_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0719688 0.0343525 0.769885 0 0.21343
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.197064 0.154881 0.271536 0.475908 0.300515

CAGE analysis