Hb_000849_120

Information

Type -
Description -
Location Contig849: 140853-145508
Sequence    

Annotation

kegg
ID rcu:RCOM_1627250
description lipoxygenase, putative (EC:1.13.11.12)
nr
ID XP_012084809.1
description PREDICTED: linoleate 9S-lipoxygenase 6-like [Jatropha curcas]
swissprot
ID Q41238
description Linoleate 9S-lipoxygenase 6 (Fragment) OS=Solanum tuberosum GN=LOX1.6 PE=1 SV=1
trembl
ID A0A067LDG2
description Lipoxygenase OS=Jatropha curcas GN=JCGZ_15103 PE=3 SV=1
Gene Ontology
ID GO:0005515
description linoleate 9s-lipoxygenase 6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60297: 143748-144787 , PASA_asmbl_60298: 141191-141410 , PASA_asmbl_60301: 142367-142764 , PASA_asmbl_60303: 146065-146799
cDNA
(Sanger)
(ID:Location)		 017_N17r.ab1: 137130-144008

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000849_120 0.0 - - PREDICTED: linoleate 9S-lipoxygenase 6-like [Jatropha curcas]
2 Hb_000110_060 0.1104048081 - - PREDICTED: uncharacterized protein LOC105636258 [Jatropha curcas]
3 Hb_000684_390 0.1271946161 - - PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Jatropha curcas]
4 Hb_004326_010 0.1274319767 - - cationic amino acid transporter, putative [Ricinus communis]
5 Hb_000181_460 0.1282130905 - - cmp-2-keto-3-deoctulosonate (cmp-kdo) cytidyltransferase, putative [Ricinus communis]
6 Hb_009252_010 0.1368188338 - - PREDICTED: kinesin light chain [Jatropha curcas]
7 Hb_005348_110 0.1371183552 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
8 Hb_011360_110 0.1377361575 - - PREDICTED: UDP-glucose 6-dehydrogenase 1 [Vitis vinifera]
9 Hb_001628_120 0.1391887985 - - putative ascorbate peroxidase, partial [Taraxacum brevicorniculatum]
10 Hb_000106_030 0.1392444646 - - amino acid transporter, putative [Ricinus communis]
11 Hb_000570_020 0.1406510361 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9H isoform X1 [Jatropha curcas]
12 Hb_001481_130 0.1426536848 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003778_020 0.1433910208 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
14 Hb_005470_030 0.1434115024 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 isoform X2 [Jatropha curcas]
15 Hb_005228_040 0.1459927638 - - PREDICTED: uncharacterized protein At4g06598-like [Jatropha curcas]
16 Hb_028639_030 0.1474605278 - - PREDICTED: transmembrane 9 superfamily member 2-like [Jatropha curcas]
17 Hb_001619_060 0.1474831313 - - PREDICTED: uncharacterized methyltransferase At1g78140, chloroplastic [Jatropha curcas]
18 Hb_000139_300 0.1496834588 - - hypothetical protein POPTR_0008s19950g [Populus trichocarpa]
19 Hb_001946_380 0.1506106384 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Jatropha curcas]
20 Hb_000935_040 0.1510455359 - - Uncharacterized protein isoform 2 [Theobroma cacao]

Gene co-expression network

sample Hb_000849_120 Hb_000849_120 Hb_000110_060 Hb_000110_060 Hb_000849_120--Hb_000110_060 Hb_000684_390 Hb_000684_390 Hb_000849_120--Hb_000684_390 Hb_004326_010 Hb_004326_010 Hb_000849_120--Hb_004326_010 Hb_000181_460 Hb_000181_460 Hb_000849_120--Hb_000181_460 Hb_009252_010 Hb_009252_010 Hb_000849_120--Hb_009252_010 Hb_005348_110 Hb_005348_110 Hb_000849_120--Hb_005348_110 Hb_002615_030 Hb_002615_030 Hb_000110_060--Hb_002615_030 Hb_003371_070 Hb_003371_070 Hb_000110_060--Hb_003371_070 Hb_001619_060 Hb_001619_060 Hb_000110_060--Hb_001619_060 Hb_000110_060--Hb_000181_460 Hb_021943_090 Hb_021943_090 Hb_000110_060--Hb_021943_090 Hb_000920_310 Hb_000920_310 Hb_000684_390--Hb_000920_310 Hb_000000_310 Hb_000000_310 Hb_000684_390--Hb_000000_310 Hb_001628_120 Hb_001628_120 Hb_000684_390--Hb_001628_120 Hb_003682_070 Hb_003682_070 Hb_000684_390--Hb_003682_070 Hb_000107_250 Hb_000107_250 Hb_000684_390--Hb_000107_250 Hb_001017_030 Hb_001017_030 Hb_000684_390--Hb_001017_030 Hb_007537_030 Hb_007537_030 Hb_004326_010--Hb_007537_030 Hb_000570_020 Hb_000570_020 Hb_004326_010--Hb_000570_020 Hb_000157_140 Hb_000157_140 Hb_004326_010--Hb_000157_140 Hb_004326_010--Hb_000181_460 Hb_000120_740 Hb_000120_740 Hb_004326_010--Hb_000120_740 Hb_001105_130 Hb_001105_130 Hb_004326_010--Hb_001105_130 Hb_005016_010 Hb_005016_010 Hb_000181_460--Hb_005016_010 Hb_010390_010 Hb_010390_010 Hb_000181_460--Hb_010390_010 Hb_177215_030 Hb_177215_030 Hb_000181_460--Hb_177215_030 Hb_003044_080 Hb_003044_080 Hb_000181_460--Hb_003044_080 Hb_030959_010 Hb_030959_010 Hb_009252_010--Hb_030959_010 Hb_009674_050 Hb_009674_050 Hb_009252_010--Hb_009674_050 Hb_000120_860 Hb_000120_860 Hb_009252_010--Hb_000120_860 Hb_005228_040 Hb_005228_040 Hb_009252_010--Hb_005228_040 Hb_009252_010--Hb_000684_390 Hb_009252_010--Hb_005348_110 Hb_005348_110--Hb_009674_050 Hb_003746_010 Hb_003746_010 Hb_005348_110--Hb_003746_010 Hb_001216_110 Hb_001216_110 Hb_005348_110--Hb_001216_110 Hb_000011_220 Hb_000011_220 Hb_005348_110--Hb_000011_220 Hb_010175_030 Hb_010175_030 Hb_005348_110--Hb_010175_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.408187 1.56119 2.50227 5.54658 0.366603 0.383582
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.845641 1.01772 2.63974 1.66769 5.47073

CAGE analysis