Hb_000849_150

Information

Type -
Description -
Location Contig849: 156842-160217
Sequence    

Annotation

kegg
ID rcu:RCOM_1627470
description hypothetical protein
nr
ID KDP45234.1
description hypothetical protein JCGZ_15099 [Jatropha curcas]
swissprot
ID Q67XL4
description Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabidopsis thaliana GN=At3g25440 PE=2 SV=1
trembl
ID A0A067LLL1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15099 PE=4 SV=1
Gene Ontology
ID GO:0003723
description uncharacterized crm domain-containing protein chloroplastic isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60304: 156775-160103
cDNA
(Sanger)
(ID:Location)		 051_P20.ab1: 156775-158871 , 052_J11.ab1: 156775-158850

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000849_150 0.0 - - hypothetical protein JCGZ_15099 [Jatropha curcas]
2 Hb_000025_750 0.0690386971 - - PREDICTED: nuclear speckle splicing regulatory protein 1-like [Jatropha curcas]
3 Hb_004032_460 0.096858393 - - -
4 Hb_060437_010 0.1040839008 - - E3 ubiquitin protein ligase RIE1 [Morus notabilis]
5 Hb_001408_090 0.1101694249 - - PREDICTED: uncharacterized protein LOC105629659 [Jatropha curcas]
6 Hb_002897_040 0.110579259 - - PREDICTED: LOW QUALITY PROTEIN: protein NETWORKED 4A [Jatropha curcas]
7 Hb_005725_070 0.1114537307 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000544_040 0.1115959131 - - PREDICTED: mitogen-activated protein kinase 9-like [Jatropha curcas]
9 Hb_000173_370 0.1124422109 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
10 Hb_002192_070 0.1129800046 - - -
11 Hb_004531_090 0.1147078954 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
12 Hb_007305_010 0.114747864 - - PREDICTED: girdin-like [Jatropha curcas]
13 Hb_000465_120 0.1147955867 - - PREDICTED: uncharacterized protein LOC105632294 [Jatropha curcas]
14 Hb_000692_170 0.1161284235 - - PREDICTED: uncharacterized protein LOC105638529 [Jatropha curcas]
15 Hb_000093_130 0.1178292547 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
16 Hb_001227_110 0.1181113918 - - U2 snrnp auxiliary factor, small subunit, putative [Ricinus communis]
17 Hb_000300_540 0.1212186932 - - PREDICTED: syntaxin-132 [Jatropha curcas]
18 Hb_000088_180 0.122597349 - - hypothetical protein JCGZ_11198 [Jatropha curcas]
19 Hb_002025_140 0.1248967501 - - PREDICTED: UBX domain-containing protein 2 isoform X1 [Jatropha curcas]
20 Hb_000613_020 0.1255135958 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]

Gene co-expression network

sample Hb_000849_150 Hb_000849_150 Hb_000025_750 Hb_000025_750 Hb_000849_150--Hb_000025_750 Hb_004032_460 Hb_004032_460 Hb_000849_150--Hb_004032_460 Hb_060437_010 Hb_060437_010 Hb_000849_150--Hb_060437_010 Hb_001408_090 Hb_001408_090 Hb_000849_150--Hb_001408_090 Hb_002897_040 Hb_002897_040 Hb_000849_150--Hb_002897_040 Hb_005725_070 Hb_005725_070 Hb_000849_150--Hb_005725_070 Hb_001227_110 Hb_001227_110 Hb_000025_750--Hb_001227_110 Hb_000025_750--Hb_001408_090 Hb_000692_170 Hb_000692_170 Hb_000025_750--Hb_000692_170 Hb_000093_130 Hb_000093_130 Hb_000025_750--Hb_000093_130 Hb_002025_140 Hb_002025_140 Hb_000025_750--Hb_002025_140 Hb_000088_180 Hb_000088_180 Hb_004032_460--Hb_000088_180 Hb_000173_370 Hb_000173_370 Hb_004032_460--Hb_000173_370 Hb_000300_540 Hb_000300_540 Hb_004032_460--Hb_000300_540 Hb_000365_350 Hb_000365_350 Hb_004032_460--Hb_000365_350 Hb_000363_340 Hb_000363_340 Hb_004032_460--Hb_000363_340 Hb_001034_020 Hb_001034_020 Hb_060437_010--Hb_001034_020 Hb_003050_090 Hb_003050_090 Hb_060437_010--Hb_003050_090 Hb_012760_200 Hb_012760_200 Hb_060437_010--Hb_012760_200 Hb_001178_060 Hb_001178_060 Hb_060437_010--Hb_001178_060 Hb_060437_010--Hb_000025_750 Hb_000640_210 Hb_000640_210 Hb_060437_010--Hb_000640_210 Hb_003216_110 Hb_003216_110 Hb_001408_090--Hb_003216_110 Hb_001408_090--Hb_001227_110 Hb_001408_090--Hb_002025_140 Hb_000331_480 Hb_000331_480 Hb_001408_090--Hb_000331_480 Hb_001498_030 Hb_001498_030 Hb_001408_090--Hb_001498_030 Hb_006631_010 Hb_006631_010 Hb_002897_040--Hb_006631_010 Hb_000173_210 Hb_000173_210 Hb_002897_040--Hb_000173_210 Hb_000544_120 Hb_000544_120 Hb_002897_040--Hb_000544_120 Hb_002897_040--Hb_000025_750 Hb_002897_040--Hb_000173_370 Hb_012977_010 Hb_012977_010 Hb_005725_070--Hb_012977_010 Hb_005725_070--Hb_001498_030 Hb_005725_070--Hb_002025_140 Hb_002818_040 Hb_002818_040 Hb_005725_070--Hb_002818_040 Hb_005314_010 Hb_005314_010 Hb_005725_070--Hb_005314_010 Hb_024399_010 Hb_024399_010 Hb_005725_070--Hb_024399_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
62.5801 9.74374 8.12624 2.71 43.9119 33.3711
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.6481 9.31804 10.4852 6.35404 4.26771

CAGE analysis