Hb_000850_040

Information

Type -
Description -
Location Contig850: 75730-83698
Sequence    

Annotation

kegg
ID rcu:RCOM_0532650
description hypothetical protein
nr
ID XP_002526973.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SLV4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0532650 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60394: 76346-83020 , PASA_asmbl_60395: 76847-77222 , PASA_asmbl_60396: 78813-79039 , PASA_asmbl_60397: 81836-82237 , PASA_asmbl_60400: 84466-85859
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000850_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_183557_010 0.1407319592 - - hypothetical protein JCGZ_24847 [Jatropha curcas]
3 Hb_003633_040 0.1469687678 - - hypothetical protein B456_008G146200 [Gossypium raimondii]
4 Hb_075764_010 0.1478290708 - - PREDICTED: PRA1 family protein A1-like [Jatropha curcas]
5 Hb_026228_020 0.1490023002 - - PREDICTED: uncharacterized protein LOC105632747 [Jatropha curcas]
6 Hb_004718_040 0.1509000352 - - PREDICTED: uncharacterized protein LOC105638292 [Jatropha curcas]
7 Hb_106411_010 0.1547326759 - - Ribosomal protein S25 family protein [Theobroma cacao]
8 Hb_001124_020 0.1551462888 - - PREDICTED: protein yippee-like At4g27745 [Jatropha curcas]
9 Hb_076875_020 0.1552123081 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
10 Hb_001135_140 0.1553630847 - - PREDICTED: serine/threonine-protein kinase PBS1-like [Malus domestica]
11 Hb_126295_010 0.1560202311 - - PREDICTED: protein SEH1 [Jatropha curcas]
12 Hb_010565_010 0.1567108121 - - PREDICTED: N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like isoform X2 [Populus euphratica]
13 Hb_002508_010 0.1579987539 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
14 Hb_000130_190 0.159586231 - - PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]
15 Hb_001191_110 0.1610431881 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
16 Hb_168973_010 0.1616610522 - - -
17 Hb_000074_060 0.1632221935 - - PREDICTED: membrane-associated progesterone-binding protein 4-like [Populus euphratica]
18 Hb_003925_070 0.165548108 - - ATOZI1, putative [Ricinus communis]
19 Hb_005023_030 0.165883042 - - PREDICTED: uncharacterized protein LOC103417254 [Malus domestica]
20 Hb_103760_010 0.1680106926 - - serine/arginine rich splicing factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000850_040 Hb_000850_040 Hb_183557_010 Hb_183557_010 Hb_000850_040--Hb_183557_010 Hb_003633_040 Hb_003633_040 Hb_000850_040--Hb_003633_040 Hb_075764_010 Hb_075764_010 Hb_000850_040--Hb_075764_010 Hb_026228_020 Hb_026228_020 Hb_000850_040--Hb_026228_020 Hb_004718_040 Hb_004718_040 Hb_000850_040--Hb_004718_040 Hb_106411_010 Hb_106411_010 Hb_000850_040--Hb_106411_010 Hb_003536_110 Hb_003536_110 Hb_183557_010--Hb_003536_110 Hb_183557_010--Hb_106411_010 Hb_076875_020 Hb_076875_020 Hb_183557_010--Hb_076875_020 Hb_002192_090 Hb_002192_090 Hb_183557_010--Hb_002192_090 Hb_001124_020 Hb_001124_020 Hb_183557_010--Hb_001124_020 Hb_115107_010 Hb_115107_010 Hb_003633_040--Hb_115107_010 Hb_003633_040--Hb_076875_020 Hb_002110_040 Hb_002110_040 Hb_003633_040--Hb_002110_040 Hb_115477_010 Hb_115477_010 Hb_003633_040--Hb_115477_010 Hb_019053_010 Hb_019053_010 Hb_003633_040--Hb_019053_010 Hb_088163_010 Hb_088163_010 Hb_075764_010--Hb_088163_010 Hb_000230_180 Hb_000230_180 Hb_075764_010--Hb_000230_180 Hb_099878_050 Hb_099878_050 Hb_075764_010--Hb_099878_050 Hb_002611_020 Hb_002611_020 Hb_075764_010--Hb_002611_020 Hb_165402_010 Hb_165402_010 Hb_075764_010--Hb_165402_010 Hb_002122_010 Hb_002122_010 Hb_075764_010--Hb_002122_010 Hb_005023_030 Hb_005023_030 Hb_026228_020--Hb_005023_030 Hb_072922_010 Hb_072922_010 Hb_026228_020--Hb_072922_010 Hb_001018_130 Hb_001018_130 Hb_026228_020--Hb_001018_130 Hb_001018_110 Hb_001018_110 Hb_026228_020--Hb_001018_110 Hb_001318_200 Hb_001318_200 Hb_026228_020--Hb_001318_200 Hb_001135_140 Hb_001135_140 Hb_026228_020--Hb_001135_140 Hb_000521_160 Hb_000521_160 Hb_004718_040--Hb_000521_160 Hb_002518_030 Hb_002518_030 Hb_004718_040--Hb_002518_030 Hb_002232_100 Hb_002232_100 Hb_004718_040--Hb_002232_100 Hb_004718_040--Hb_001124_020 Hb_000080_060 Hb_000080_060 Hb_004718_040--Hb_000080_060 Hb_000453_160 Hb_000453_160 Hb_004718_040--Hb_000453_160 Hb_000025_050 Hb_000025_050 Hb_106411_010--Hb_000025_050 Hb_076874_010 Hb_076874_010 Hb_106411_010--Hb_076874_010 Hb_003925_070 Hb_003925_070 Hb_106411_010--Hb_003925_070 Hb_001752_040 Hb_001752_040 Hb_106411_010--Hb_001752_040 Hb_005085_020 Hb_005085_020 Hb_106411_010--Hb_005085_020 Hb_002508_010 Hb_002508_010 Hb_106411_010--Hb_002508_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.86079 1.90234 2.49631 8.22638 4.12485 9.25911
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.788188 4.03759 2.62148 2.31128 1.42154

CAGE analysis