Hb_000852_050

Information

Type -
Description -
Location Contig852: 45807-49333
Sequence    

Annotation

kegg
ID pop:POPTR_0018s02450g
description POPTRDRAFT_910433; hypothetical protein
nr
ID XP_002324325.2
description hypothetical protein POPTR_0018s02450g [Populus trichocarpa]
swissprot
ID C0LGP4
description Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=2 SV=1
trembl
ID B9IL48
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s02450g PE=4 SV=2
Gene Ontology
ID GO:0004672
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60442: 46620-46853 , PASA_asmbl_60443: 47738-48359 , PASA_asmbl_60444: 48510-48878
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000852_050 0.0 - - hypothetical protein POPTR_0018s02450g [Populus trichocarpa]
2 Hb_000237_150 0.0772975738 - - Epoxide hydrolase 2 [Morus notabilis]
3 Hb_000238_060 0.0805054515 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
4 Hb_002150_010 0.0914057941 - - hypothetical protein POPTR_0001s10240g [Populus trichocarpa]
5 Hb_002391_350 0.0978062566 - - PREDICTED: uncharacterized protein LOC105647080 [Jatropha curcas]
6 Hb_001405_100 0.097821692 - - PREDICTED: lysM domain receptor-like kinase 4 [Jatropha curcas]
7 Hb_001638_110 0.101994861 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000649_030 0.1026808918 - - scab resistance family protein [Populus trichocarpa]
9 Hb_019229_020 0.1063705105 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
10 Hb_000616_050 0.1073072891 - - PREDICTED: uncharacterized protein LOC105639906 [Jatropha curcas]
11 Hb_000934_290 0.1090028842 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003807_020 0.1124731895 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
13 Hb_088916_010 0.1137800464 - - PREDICTED: receptor-like serine/threonine-protein kinase At4g25390 [Jatropha curcas]
14 Hb_002671_110 0.1173014675 - - PREDICTED: remorin-like [Jatropha curcas]
15 Hb_001221_480 0.1200200879 - - metal ion binding protein, putative [Ricinus communis]
16 Hb_001838_050 0.1215396127 - - hypothetical protein B456_007G218500 [Gossypium raimondii]
17 Hb_000081_020 0.1215986025 - - PREDICTED: protein NRT1/ PTR FAMILY 1.1-like [Camelina sativa]
18 Hb_000276_030 0.1234068126 - - dimethylaniline monooxygenase, putative [Ricinus communis]
19 Hb_032050_050 0.1239136455 - - PREDICTED: peroxidase 12-like [Jatropha curcas]
20 Hb_003031_030 0.1265170436 - - hypothetical protein JCGZ_21288 [Jatropha curcas]

Gene co-expression network

sample Hb_000852_050 Hb_000852_050 Hb_000237_150 Hb_000237_150 Hb_000852_050--Hb_000237_150 Hb_000238_060 Hb_000238_060 Hb_000852_050--Hb_000238_060 Hb_002150_010 Hb_002150_010 Hb_000852_050--Hb_002150_010 Hb_002391_350 Hb_002391_350 Hb_000852_050--Hb_002391_350 Hb_001405_100 Hb_001405_100 Hb_000852_050--Hb_001405_100 Hb_001638_110 Hb_001638_110 Hb_000852_050--Hb_001638_110 Hb_000237_150--Hb_000238_060 Hb_000237_150--Hb_001405_100 Hb_000616_050 Hb_000616_050 Hb_000237_150--Hb_000616_050 Hb_000649_030 Hb_000649_030 Hb_000237_150--Hb_000649_030 Hb_002671_110 Hb_002671_110 Hb_000237_150--Hb_002671_110 Hb_000238_060--Hb_001405_100 Hb_000238_060--Hb_002671_110 Hb_000081_020 Hb_000081_020 Hb_000238_060--Hb_000081_020 Hb_005228_170 Hb_005228_170 Hb_000238_060--Hb_005228_170 Hb_002150_010--Hb_002391_350 Hb_002150_010--Hb_000237_150 Hb_032050_050 Hb_032050_050 Hb_002150_010--Hb_032050_050 Hb_001838_050 Hb_001838_050 Hb_002150_010--Hb_001838_050 Hb_088916_010 Hb_088916_010 Hb_002150_010--Hb_088916_010 Hb_004884_200 Hb_004884_200 Hb_002391_350--Hb_004884_200 Hb_003807_020 Hb_003807_020 Hb_002391_350--Hb_003807_020 Hb_009627_040 Hb_009627_040 Hb_002391_350--Hb_009627_040 Hb_005237_040 Hb_005237_040 Hb_002391_350--Hb_005237_040 Hb_000335_050 Hb_000335_050 Hb_002391_350--Hb_000335_050 Hb_006711_020 Hb_006711_020 Hb_002391_350--Hb_006711_020 Hb_001405_100--Hb_002671_110 Hb_006006_070 Hb_006006_070 Hb_001405_100--Hb_006006_070 Hb_001405_100--Hb_000649_030 Hb_019229_020 Hb_019229_020 Hb_001638_110--Hb_019229_020 Hb_001638_110--Hb_000238_060 Hb_001638_110--Hb_005228_170 Hb_001638_110--Hb_002671_110 Hb_001638_110--Hb_000649_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.766348 0.145196 0.459284 0.0119597 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.9187 0.113843

CAGE analysis