Hb_000853_010

Information

Type -
Description -
Location Contig853: 2681-5681
Sequence    

Annotation

kegg
ID rcu:RCOM_1179070
description Pectinesterase-3 precursor, putative (EC:3.1.1.11)
nr
ID XP_002523113.1
description Pectinesterase-3 precursor, putative [Ricinus communis]
swissprot
ID O81301
description Probable pectinesterase/pectinesterase inhibitor 40 OS=Arabidopsis thaliana GN=PME40 PE=2 SV=1
trembl
ID B9SAU4
description Pectinesterase OS=Ricinus communis GN=RCOM_1179070 PE=3 SV=1
Gene Ontology
ID GO:0005618
description pectinesterase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60454: 3346-3548 , PASA_asmbl_60455: 3880-5710
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000853_010 0.0 - - Pectinesterase-3 precursor, putative [Ricinus communis]
2 Hb_001416_170 0.05835253 - - kinase, putative [Ricinus communis]
3 Hb_006834_010 0.0766687563 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003811_050 0.1152946527 - - hypothetical protein JCGZ_01310 [Jatropha curcas]
5 Hb_000975_130 0.1153364839 - - PREDICTED: uncharacterized protein LOC104445138 [Eucalyptus grandis]
6 Hb_002580_020 0.1185599361 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
7 Hb_004984_020 0.1202824804 - - PREDICTED: uncharacterized protein LOC105647814 [Jatropha curcas]
8 Hb_000676_130 0.13445694 - - PREDICTED: peroxidase 72-like [Nelumbo nucifera]
9 Hb_055147_020 0.1380801716 - - hypothetical protein EUGRSUZ_C03837 [Eucalyptus grandis]
10 Hb_014865_010 0.1425072796 - - hypothetical protein PRUPE_ppa017366mg, partial [Prunus persica]
11 Hb_005672_030 0.144861035 - - PREDICTED: high mobility group B protein 3-like [Jatropha curcas]
12 Hb_002437_010 0.1469168799 - - PREDICTED: uncharacterized protein LOC105123193 [Populus euphratica]
13 Hb_000956_060 0.153504541 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
14 Hb_000007_070 0.1605512094 - - hypothetical protein POPTR_0008s11290g [Populus trichocarpa]
15 Hb_000127_050 0.1611302448 - - -
16 Hb_000705_110 0.1659871886 - - hypothetical protein POPTR_0005s09220g [Populus trichocarpa]
17 Hb_160814_010 0.169847252 - - PREDICTED: probable sulfate transporter 3.5 isoform X1 [Jatropha curcas]
18 Hb_055440_010 0.1699358913 - - protein binding protein, putative [Ricinus communis]
19 Hb_001195_210 0.1700861825 - - -
20 Hb_000743_070 0.1705372484 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_21060 [Jatropha curcas]

Gene co-expression network

sample Hb_000853_010 Hb_000853_010 Hb_001416_170 Hb_001416_170 Hb_000853_010--Hb_001416_170 Hb_006834_010 Hb_006834_010 Hb_000853_010--Hb_006834_010 Hb_003811_050 Hb_003811_050 Hb_000853_010--Hb_003811_050 Hb_000975_130 Hb_000975_130 Hb_000853_010--Hb_000975_130 Hb_002580_020 Hb_002580_020 Hb_000853_010--Hb_002580_020 Hb_004984_020 Hb_004984_020 Hb_000853_010--Hb_004984_020 Hb_001416_170--Hb_006834_010 Hb_055147_020 Hb_055147_020 Hb_001416_170--Hb_055147_020 Hb_001416_170--Hb_000975_130 Hb_001416_170--Hb_004984_020 Hb_055440_010 Hb_055440_010 Hb_001416_170--Hb_055440_010 Hb_006834_010--Hb_004984_020 Hb_006834_010--Hb_002580_020 Hb_006834_010--Hb_055440_010 Hb_001002_090 Hb_001002_090 Hb_006834_010--Hb_001002_090 Hb_003811_050--Hb_000975_130 Hb_000007_070 Hb_000007_070 Hb_003811_050--Hb_000007_070 Hb_081191_010 Hb_081191_010 Hb_003811_050--Hb_081191_010 Hb_003811_050--Hb_002580_020 Hb_000956_060 Hb_000956_060 Hb_003811_050--Hb_000956_060 Hb_000676_130 Hb_000676_130 Hb_003811_050--Hb_000676_130 Hb_000975_130--Hb_000956_060 Hb_005672_030 Hb_005672_030 Hb_000975_130--Hb_005672_030 Hb_000975_130--Hb_000676_130 Hb_004631_030 Hb_004631_030 Hb_000975_130--Hb_004631_030 Hb_009615_030 Hb_009615_030 Hb_002580_020--Hb_009615_030 Hb_002580_020--Hb_081191_010 Hb_002580_020--Hb_000676_130 Hb_004984_020--Hb_055440_010 Hb_004984_020--Hb_002580_020 Hb_005144_080 Hb_005144_080 Hb_004984_020--Hb_005144_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.206215 0.860047 1.83957 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.24944 0

CAGE analysis