Hb_000853_020

Information

Type -
Description -
Location Contig853: 21656-23878
Sequence    

Annotation

kegg
ID pop:POPTR_0002s20350g
description POPTRDRAFT_850247; hypothetical protein
nr
ID XP_011041962.1
description PREDICTED: endoglucanase 17 [Populus euphratica]
swissprot
ID O81416
description Endoglucanase 17 OS=Arabidopsis thaliana GN=At4g02290 PE=2 SV=1
trembl
ID B9GSC6
description Endoglucanase OS=Populus trichocarpa GN=POPTR_0002s20350g PE=3 SV=1
Gene Ontology
ID GO:0008810
description endoglucanase 17

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60457: 21614-24271
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000853_020 0.0 - - PREDICTED: endoglucanase 17 [Populus euphratica]
2 Hb_000175_160 0.0332634402 - - PREDICTED: protein TOO MANY MOUTHS [Jatropha curcas]
3 Hb_022092_100 0.0403475581 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001969_030 0.0495753874 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000691_060 0.0582800904 - - RecName: Full=(S)-hydroxynitrile lyase; AltName: Full=(S)-acetone-cyanohydrin lyase; AltName: Full=Oxynitrilase [Hevea brasiliensis]
6 Hb_000334_100 0.0662863379 - - hypothetical protein JCGZ_16788 [Jatropha curcas]
7 Hb_000008_100 0.0663502474 - - Cyclic nucleotide-gated channel 15 [Theobroma cacao]
8 Hb_002391_280 0.0664073521 - - PREDICTED: ammonium transporter 3 member 1-like [Jatropha curcas]
9 Hb_000489_050 0.0664101995 - - PREDICTED: uncharacterized protein LOC105643984 isoform X1 [Jatropha curcas]
10 Hb_002817_020 0.066430863 - - -
11 Hb_003667_030 0.0665715676 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL15 [Jatropha curcas]
12 Hb_000221_010 0.0668410517 - - polyprotein [Oryza australiensis]
13 Hb_001019_110 0.0672843226 - - PREDICTED: cytochrome P450 734A1 [Jatropha curcas]
14 Hb_156853_010 0.067316041 - - PREDICTED: vinorine synthase-like [Populus euphratica]
15 Hb_000381_060 0.067359905 - - -
16 Hb_002151_140 0.0675299654 - - PREDICTED: lichenase-2-like [Pyrus x bretschneideri]
17 Hb_000784_050 0.0678813024 - - PREDICTED: auxin-induced protein X10A-like [Nelumbo nucifera]
18 Hb_001132_020 0.0679188742 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
19 Hb_000280_070 0.0679961295 - - PREDICTED: PCTP-like protein isoform X1 [Jatropha curcas]
20 Hb_000307_080 0.068459229 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000853_020 Hb_000853_020 Hb_000175_160 Hb_000175_160 Hb_000853_020--Hb_000175_160 Hb_022092_100 Hb_022092_100 Hb_000853_020--Hb_022092_100 Hb_001969_030 Hb_001969_030 Hb_000853_020--Hb_001969_030 Hb_000691_060 Hb_000691_060 Hb_000853_020--Hb_000691_060 Hb_000334_100 Hb_000334_100 Hb_000853_020--Hb_000334_100 Hb_000008_100 Hb_000008_100 Hb_000853_020--Hb_000008_100 Hb_000175_160--Hb_022092_100 Hb_000175_160--Hb_000691_060 Hb_004117_240 Hb_004117_240 Hb_000175_160--Hb_004117_240 Hb_000307_080 Hb_000307_080 Hb_000175_160--Hb_000307_080 Hb_000173_070 Hb_000173_070 Hb_000175_160--Hb_000173_070 Hb_022092_100--Hb_000691_060 Hb_003667_030 Hb_003667_030 Hb_022092_100--Hb_003667_030 Hb_000489_050 Hb_000489_050 Hb_022092_100--Hb_000489_050 Hb_022092_100--Hb_000334_100 Hb_002837_120 Hb_002837_120 Hb_001969_030--Hb_002837_120 Hb_001969_030--Hb_000175_160 Hb_001969_030--Hb_022092_100 Hb_003641_040 Hb_003641_040 Hb_001969_030--Hb_003641_040 Hb_056196_020 Hb_056196_020 Hb_001969_030--Hb_056196_020 Hb_090511_010 Hb_090511_010 Hb_000691_060--Hb_090511_010 Hb_012675_030 Hb_012675_030 Hb_000691_060--Hb_012675_030 Hb_130862_010 Hb_130862_010 Hb_000691_060--Hb_130862_010 Hb_000769_040 Hb_000769_040 Hb_000691_060--Hb_000769_040 Hb_022862_010 Hb_022862_010 Hb_000691_060--Hb_022862_010 Hb_105767_030 Hb_105767_030 Hb_000691_060--Hb_105767_030 Hb_000334_100--Hb_000489_050 Hb_000334_100--Hb_000008_100 Hb_002391_280 Hb_002391_280 Hb_000334_100--Hb_002391_280 Hb_002817_020 Hb_002817_020 Hb_000334_100--Hb_002817_020 Hb_000334_100--Hb_003667_030 Hb_000221_010 Hb_000221_010 Hb_000334_100--Hb_000221_010 Hb_000008_100--Hb_002391_280 Hb_000008_100--Hb_002817_020 Hb_000008_100--Hb_000221_010 Hb_000008_100--Hb_000489_050 Hb_001019_110 Hb_001019_110 Hb_000008_100--Hb_001019_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0302653 0.151965 137.871 41.7757 0.0270373 0.0236607
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0385982 1.31595

CAGE analysis