Hb_000853_030

Information

Type -
Description -
Location Contig853: 26336-34080
Sequence    

Annotation

kegg
ID tcc:TCM_004698
description Sucrose synthase 3 isoform 1
nr
ID AGM14947.1
description sucrose synthase 2 [Hevea brasiliensis]
swissprot
ID O24301
description Sucrose synthase 2 OS=Pisum sativum GN=SUS2 PE=2 SV=1
trembl
ID A0A023HKA9
description Sucrose synthase OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0016157
description sucrose synthase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60458: 26341-33601
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000853_030 0.0 - - sucrose synthase 2 [Hevea brasiliensis]
2 Hb_001638_040 0.116866758 - - Nucleobase-ascorbate transporter 3 [Glycine soja]
3 Hb_164010_070 0.1214732386 - - Paramyosin, putative [Ricinus communis]
4 Hb_000390_100 0.1416627289 - - alpha-hydroxynitrile lyase family protein [Populus trichocarpa]
5 Hb_000932_070 0.1451052813 - - PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 3 [Jatropha curcas]
6 Hb_002739_150 0.1507164014 - - Uncharacterized protein TCM_016791 [Theobroma cacao]
7 Hb_001396_260 0.1520323873 - - PREDICTED: F-box only protein 6 [Jatropha curcas]
8 Hb_000836_120 0.1541808258 - - syntaxin, putative [Ricinus communis]
9 Hb_084429_010 0.1544111811 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 [Populus euphratica]
10 Hb_001269_690 0.157365756 - - conserved hypothetical protein [Ricinus communis]
11 Hb_089140_030 0.1602545746 - - PREDICTED: thiol protease aleurain-like [Jatropha curcas]
12 Hb_000740_110 0.1604926189 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01850 [Jatropha curcas]
13 Hb_001220_030 0.1626184072 - - PREDICTED: BRCA1-A complex subunit Abraxas [Jatropha curcas]
14 Hb_001989_020 0.1632220442 - - hypothetical protein JCGZ_15521 [Jatropha curcas]
15 Hb_007307_030 0.163323646 - - PREDICTED: myosin-11 isoform X2 [Jatropha curcas]
16 Hb_010831_020 0.1645391558 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
17 Hb_000200_280 0.1659020411 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]
18 Hb_164945_040 0.166436797 - - PREDICTED: uncharacterized protein LOC105628261 [Jatropha curcas]
19 Hb_000449_050 0.1686111697 - - Protein bem46, putative [Ricinus communis]
20 Hb_000649_010 0.1686996001 - - PREDICTED: adagio protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000853_030 Hb_000853_030 Hb_001638_040 Hb_001638_040 Hb_000853_030--Hb_001638_040 Hb_164010_070 Hb_164010_070 Hb_000853_030--Hb_164010_070 Hb_000390_100 Hb_000390_100 Hb_000853_030--Hb_000390_100 Hb_000932_070 Hb_000932_070 Hb_000853_030--Hb_000932_070 Hb_002739_150 Hb_002739_150 Hb_000853_030--Hb_002739_150 Hb_001396_260 Hb_001396_260 Hb_000853_030--Hb_001396_260 Hb_010831_020 Hb_010831_020 Hb_001638_040--Hb_010831_020 Hb_000540_120 Hb_000540_120 Hb_001638_040--Hb_000540_120 Hb_000449_050 Hb_000449_050 Hb_001638_040--Hb_000449_050 Hb_001638_040--Hb_164010_070 Hb_001638_040--Hb_002739_150 Hb_000340_110 Hb_000340_110 Hb_164010_070--Hb_000340_110 Hb_144824_010 Hb_144824_010 Hb_164010_070--Hb_144824_010 Hb_124677_060 Hb_124677_060 Hb_164010_070--Hb_124677_060 Hb_006683_040 Hb_006683_040 Hb_164010_070--Hb_006683_040 Hb_001053_030 Hb_001053_030 Hb_164010_070--Hb_001053_030 Hb_164010_070--Hb_000932_070 Hb_000227_060 Hb_000227_060 Hb_000390_100--Hb_000227_060 Hb_000925_160 Hb_000925_160 Hb_000390_100--Hb_000925_160 Hb_000627_180 Hb_000627_180 Hb_000390_100--Hb_000627_180 Hb_012799_120 Hb_012799_120 Hb_000390_100--Hb_012799_120 Hb_002301_380 Hb_002301_380 Hb_000390_100--Hb_002301_380 Hb_000200_280 Hb_000200_280 Hb_000390_100--Hb_000200_280 Hb_000932_070--Hb_006683_040 Hb_007894_130 Hb_007894_130 Hb_000932_070--Hb_007894_130 Hb_000932_070--Hb_000340_110 Hb_018301_010 Hb_018301_010 Hb_000932_070--Hb_018301_010 Hb_001511_110 Hb_001511_110 Hb_000932_070--Hb_001511_110 Hb_157966_010 Hb_157966_010 Hb_000932_070--Hb_157966_010 Hb_001055_030 Hb_001055_030 Hb_002739_150--Hb_001055_030 Hb_156850_070 Hb_156850_070 Hb_002739_150--Hb_156850_070 Hb_006663_030 Hb_006663_030 Hb_002739_150--Hb_006663_030 Hb_080451_010 Hb_080451_010 Hb_002739_150--Hb_080451_010 Hb_002739_150--Hb_010831_020 Hb_084429_010 Hb_084429_010 Hb_001396_260--Hb_084429_010 Hb_015763_020 Hb_015763_020 Hb_001396_260--Hb_015763_020 Hb_004096_080 Hb_004096_080 Hb_001396_260--Hb_004096_080 Hb_031089_030 Hb_031089_030 Hb_001396_260--Hb_031089_030 Hb_003157_010 Hb_003157_010 Hb_001396_260--Hb_003157_010 Hb_009028_030 Hb_009028_030 Hb_001396_260--Hb_009028_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
147.756 325.84 14.0202 73.5474 120.353 150.936
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
103.782 24.8298 71.9513 152.299 8.86703

CAGE analysis