Hb_000853_040

Information

Type -
Description -
Location Contig853: 43776-44927
Sequence    

Annotation

kegg
ID rcu:RCOM_1179100
description hypothetical protein
nr
ID XP_002523116.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SAU7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1179100 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000853_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_167452_010 0.09265939 - - hypothetical protein JCGZ_03682 [Jatropha curcas]
3 Hb_021346_040 0.1098128513 - - hypothetical protein JCGZ_26751 [Jatropha curcas]
4 Hb_000392_460 0.2095298107 - - Pectate lyase precursor, putative [Ricinus communis]
5 Hb_083822_010 0.2521124888 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
6 Hb_003938_030 0.2813883737 transcription factor TF Family: ERF ethylene-responsive transcription factor 2 [Hevea brasiliensis]
7 Hb_001104_050 0.3123933184 - - -
8 Hb_000260_150 0.3134561475 - - hypothetical protein POPTR_0344s002001g, partial [Populus trichocarpa]
9 Hb_105226_010 0.3149012641 - - PREDICTED: ammonium transporter 3 member 1-like [Jatropha curcas]
10 Hb_000375_230 0.3188564065 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
11 Hb_010661_040 0.3258923885 - - hypothetical protein POPTR_0021s00470g [Populus trichocarpa]
12 Hb_025669_030 0.3270050502 - - PREDICTED: uncharacterized protein LOC105649301 [Jatropha curcas]
13 Hb_011972_010 0.3300552065 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007145_010 0.3333362163 - - ammonium transporter 3.1-like protein [Camellia sinensis]
15 Hb_006925_090 0.3415251144 - - PREDICTED: protein HAPLESS 2 [Populus euphratica]
16 Hb_001623_310 0.3432139152 - - hypothetical protein CISIN_1g042596mg [Citrus sinensis]
17 Hb_011505_010 0.3436869068 - - -
18 Hb_040359_010 0.3500113435 - - triacylglycerol lipase, putative [Ricinus communis]
19 Hb_001470_070 0.3520443527 - - metal ion binding protein, putative [Ricinus communis]
20 Hb_009449_010 0.3704952889 - - Serine/threonine-protein kinase HT1 [Gossypium arboreum]

Gene co-expression network

sample Hb_000853_040 Hb_000853_040 Hb_167452_010 Hb_167452_010 Hb_000853_040--Hb_167452_010 Hb_021346_040 Hb_021346_040 Hb_000853_040--Hb_021346_040 Hb_000392_460 Hb_000392_460 Hb_000853_040--Hb_000392_460 Hb_083822_010 Hb_083822_010 Hb_000853_040--Hb_083822_010 Hb_003938_030 Hb_003938_030 Hb_000853_040--Hb_003938_030 Hb_001104_050 Hb_001104_050 Hb_000853_040--Hb_001104_050 Hb_167452_010--Hb_021346_040 Hb_010661_040 Hb_010661_040 Hb_167452_010--Hb_010661_040 Hb_167452_010--Hb_000392_460 Hb_000260_150 Hb_000260_150 Hb_167452_010--Hb_000260_150 Hb_016859_010 Hb_016859_010 Hb_167452_010--Hb_016859_010 Hb_021346_040--Hb_000392_460 Hb_021346_040--Hb_083822_010 Hb_021346_040--Hb_003938_030 Hb_025669_030 Hb_025669_030 Hb_021346_040--Hb_025669_030 Hb_000392_460--Hb_083822_010 Hb_001623_310 Hb_001623_310 Hb_000392_460--Hb_001623_310 Hb_000392_460--Hb_025669_030 Hb_000392_460--Hb_003938_030 Hb_083822_010--Hb_003938_030 Hb_000375_230 Hb_000375_230 Hb_083822_010--Hb_000375_230 Hb_083822_010--Hb_001623_310 Hb_105226_010 Hb_105226_010 Hb_003938_030--Hb_105226_010 Hb_000540_090 Hb_000540_090 Hb_003938_030--Hb_000540_090 Hb_040359_010 Hb_040359_010 Hb_003938_030--Hb_040359_010 Hb_001269_460 Hb_001269_460 Hb_003938_030--Hb_001269_460 Hb_003938_030--Hb_000375_230 Hb_001798_020 Hb_001798_020 Hb_001104_050--Hb_001798_020 Hb_001391_120 Hb_001391_120 Hb_001104_050--Hb_001391_120 Hb_012368_070 Hb_012368_070 Hb_001104_050--Hb_012368_070 Hb_006503_010 Hb_006503_010 Hb_001104_050--Hb_006503_010 Hb_001470_070 Hb_001470_070 Hb_001104_050--Hb_001470_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.299054 0.242982 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.434123 0 0 0

CAGE analysis