Hb_000853_130

Information

Type -
Description -
Location Contig853: 84534-86846
Sequence    

Annotation

kegg
ID rcu:RCOM_1179540
description ATP-dependent RNA helicase, putative
nr
ID XP_012072580.1
description PREDICTED: probable ATP-dependent RNA helicase DHX37 [Jatropha curcas]
swissprot
ID Q04217
description Probable ATP-dependent RNA helicase DHR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ECM16 PE=1 SV=1
trembl
ID A0A067KP28
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05769 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000853_130 0.0 - - PREDICTED: probable ATP-dependent RNA helicase DHX37 [Jatropha curcas]
2 Hb_002903_010 0.2234890571 - - 60S ribosomal protein L37-3 [Morus notabilis]
3 Hb_000504_010 0.2331696925 - - oleosin 18.2 kDa-like [Jatropha curcas]
4 Hb_005725_110 0.2356140935 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001085_180 0.2717633489 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005408_040 0.2783597665 - - -
7 Hb_000012_070 0.2839026937 - - cytochrome P450, putative [Ricinus communis]
8 Hb_115720_010 0.2842875758 - - PREDICTED: uncharacterized protein LOC105638432 [Jatropha curcas]
9 Hb_111347_010 0.2859533457 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
10 Hb_001140_240 0.2920865798 - - metal ion binding protein, putative [Ricinus communis]
11 Hb_000002_170 0.2937875854 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 1B [Jatropha curcas]
12 Hb_155092_010 0.2945061063 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]
13 Hb_000804_030 0.2954195889 - - Protein C14orf111, putative [Ricinus communis]
14 Hb_042871_010 0.297083477 - - PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Jatropha curcas]
15 Hb_183612_090 0.2991598189 - - -
16 Hb_006277_070 0.2994089424 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007477_040 0.2995588359 - - glutathione s-transferase, putative [Ricinus communis]
18 Hb_001998_060 0.3000616872 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_001277_080 0.3002778511 - - PREDICTED: vegetative cell wall protein gp1 [Jatropha curcas]
20 Hb_002391_330 0.3011691039 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000853_130 Hb_000853_130 Hb_002903_010 Hb_002903_010 Hb_000853_130--Hb_002903_010 Hb_000504_010 Hb_000504_010 Hb_000853_130--Hb_000504_010 Hb_005725_110 Hb_005725_110 Hb_000853_130--Hb_005725_110 Hb_001085_180 Hb_001085_180 Hb_000853_130--Hb_001085_180 Hb_005408_040 Hb_005408_040 Hb_000853_130--Hb_005408_040 Hb_000012_070 Hb_000012_070 Hb_000853_130--Hb_000012_070 Hb_002903_010--Hb_000504_010 Hb_001998_060 Hb_001998_060 Hb_002903_010--Hb_001998_060 Hb_115720_010 Hb_115720_010 Hb_002903_010--Hb_115720_010 Hb_039112_010 Hb_039112_010 Hb_002903_010--Hb_039112_010 Hb_000804_030 Hb_000804_030 Hb_002903_010--Hb_000804_030 Hb_000869_110 Hb_000869_110 Hb_002903_010--Hb_000869_110 Hb_000504_010--Hb_115720_010 Hb_000504_010--Hb_001998_060 Hb_002788_040 Hb_002788_040 Hb_000504_010--Hb_002788_040 Hb_000504_010--Hb_005725_110 Hb_000504_010--Hb_039112_010 Hb_007477_040 Hb_007477_040 Hb_005725_110--Hb_007477_040 Hb_008954_010 Hb_008954_010 Hb_005725_110--Hb_008954_010 Hb_005725_110--Hb_002903_010 Hb_005725_110--Hb_000804_030 Hb_012305_020 Hb_012305_020 Hb_001085_180--Hb_012305_020 Hb_183612_090 Hb_183612_090 Hb_001085_180--Hb_183612_090 Hb_004968_070 Hb_004968_070 Hb_001085_180--Hb_004968_070 Hb_000284_190 Hb_000284_190 Hb_001085_180--Hb_000284_190 Hb_061383_010 Hb_061383_010 Hb_001085_180--Hb_061383_010 Hb_032202_250 Hb_032202_250 Hb_001085_180--Hb_032202_250 Hb_012324_020 Hb_012324_020 Hb_005408_040--Hb_012324_020 Hb_094721_010 Hb_094721_010 Hb_005408_040--Hb_094721_010 Hb_000395_060 Hb_000395_060 Hb_005408_040--Hb_000395_060 Hb_000107_640 Hb_000107_640 Hb_005408_040--Hb_000107_640 Hb_000003_770 Hb_000003_770 Hb_005408_040--Hb_000003_770 Hb_001379_130 Hb_001379_130 Hb_005408_040--Hb_001379_130 Hb_000258_180 Hb_000258_180 Hb_000012_070--Hb_000258_180 Hb_000062_300 Hb_000062_300 Hb_000012_070--Hb_000062_300 Hb_000012_070--Hb_032202_250 Hb_012573_010 Hb_012573_010 Hb_000012_070--Hb_012573_010 Hb_000012_070--Hb_000284_190 Hb_034482_040 Hb_034482_040 Hb_000012_070--Hb_034482_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0307749 0 0 0 0.0450792
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.105601 0.636904 0 0.0553506 0

CAGE analysis