Hb_000853_170

Information

Type -
Description -
Location Contig853: 110806-116256
Sequence    

Annotation

kegg
ID pop:POPTR_0002s20230g
description POPTRDRAFT_816702; zinc finger family protein
nr
ID XP_011007798.1
description PREDICTED: programmed cell death protein 2 isoform X3 [Populus euphratica]
swissprot
ID P47816
description Programmed cell death protein 2 OS=Rattus norvegicus GN=Pdcd2 PE=2 SV=2
trembl
ID A0A067KAW8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13097 PE=4 SV=1
Gene Ontology
ID GO:0005737
description programmed cell death protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60474: 110853-111352 , PASA_asmbl_60475: 111383-112277 , PASA_asmbl_60476: 112992-115011
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000853_170 0.0 - - PREDICTED: programmed cell death protein 2 isoform X3 [Populus euphratica]
2 Hb_000853_420 0.0566953379 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]
3 Hb_000109_090 0.0631759643 - - PREDICTED: deoxyhypusine hydroxylase [Jatropha curcas]
4 Hb_005276_210 0.0641255779 - - PREDICTED: DNA repair helicase UVH6 isoform X2 [Jatropha curcas]
5 Hb_001006_140 0.0672390235 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 19 isoform X2 [Jatropha curcas]
6 Hb_015746_010 0.0673036854 - - PREDICTED: triacylglycerol lipase 2-like [Jatropha curcas]
7 Hb_004577_020 0.0688758145 - - PREDICTED: MOB kinase activator-like 1 [Jatropha curcas]
8 Hb_007218_080 0.0702428556 - - PREDICTED: uncharacterized protein LOC105631523 [Jatropha curcas]
9 Hb_066182_010 0.0714068927 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
10 Hb_000038_170 0.0714648461 - - PREDICTED: SCY1-like protein 2 [Jatropha curcas]
11 Hb_004491_010 0.0718458697 - - 60S ribosomal protein L51, putative [Ricinus communis]
12 Hb_000300_060 0.0722521708 - - PREDICTED: F-box protein SKIP24 [Jatropha curcas]
13 Hb_002043_190 0.0723409418 - - rwd domain-containing protein, putative [Ricinus communis]
14 Hb_063090_010 0.0732144045 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
15 Hb_000661_250 0.0736186697 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
16 Hb_004310_130 0.0753086687 - - PREDICTED: uncharacterized protein LOC105643225 [Jatropha curcas]
17 Hb_001571_040 0.0753496694 - - PREDICTED: uncharacterized protein LOC105643972 [Jatropha curcas]
18 Hb_000034_100 0.0755120268 - - dnajc14 protein, putative [Ricinus communis]
19 Hb_002081_130 0.0761007874 - - serine carboxypeptidase, putative [Ricinus communis]
20 Hb_000656_400 0.0778809828 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]

Gene co-expression network

sample Hb_000853_170 Hb_000853_170 Hb_000853_420 Hb_000853_420 Hb_000853_170--Hb_000853_420 Hb_000109_090 Hb_000109_090 Hb_000853_170--Hb_000109_090 Hb_005276_210 Hb_005276_210 Hb_000853_170--Hb_005276_210 Hb_001006_140 Hb_001006_140 Hb_000853_170--Hb_001006_140 Hb_015746_010 Hb_015746_010 Hb_000853_170--Hb_015746_010 Hb_004577_020 Hb_004577_020 Hb_000853_170--Hb_004577_020 Hb_002603_120 Hb_002603_120 Hb_000853_420--Hb_002603_120 Hb_004491_010 Hb_004491_010 Hb_000853_420--Hb_004491_010 Hb_011671_430 Hb_011671_430 Hb_000853_420--Hb_011671_430 Hb_000613_090 Hb_000613_090 Hb_000853_420--Hb_000613_090 Hb_000853_420--Hb_001006_140 Hb_010921_010 Hb_010921_010 Hb_000109_090--Hb_010921_010 Hb_003398_130 Hb_003398_130 Hb_000109_090--Hb_003398_130 Hb_003126_080 Hb_003126_080 Hb_000109_090--Hb_003126_080 Hb_002043_190 Hb_002043_190 Hb_000109_090--Hb_002043_190 Hb_005993_040 Hb_005993_040 Hb_000109_090--Hb_005993_040 Hb_000034_100 Hb_000034_100 Hb_005276_210--Hb_000034_100 Hb_054865_100 Hb_054865_100 Hb_005276_210--Hb_054865_100 Hb_000300_060 Hb_000300_060 Hb_005276_210--Hb_000300_060 Hb_002477_280 Hb_002477_280 Hb_005276_210--Hb_002477_280 Hb_066182_010 Hb_066182_010 Hb_005276_210--Hb_066182_010 Hb_003952_070 Hb_003952_070 Hb_005276_210--Hb_003952_070 Hb_000051_070 Hb_000051_070 Hb_001006_140--Hb_000051_070 Hb_000038_170 Hb_000038_170 Hb_001006_140--Hb_000038_170 Hb_001199_020 Hb_001199_020 Hb_001006_140--Hb_001199_020 Hb_000120_790 Hb_000120_790 Hb_001006_140--Hb_000120_790 Hb_001006_140--Hb_003952_070 Hb_002518_280 Hb_002518_280 Hb_001006_140--Hb_002518_280 Hb_015746_010--Hb_002043_190 Hb_000327_120 Hb_000327_120 Hb_015746_010--Hb_000327_120 Hb_004048_070 Hb_004048_070 Hb_015746_010--Hb_004048_070 Hb_001571_040 Hb_001571_040 Hb_015746_010--Hb_001571_040 Hb_000061_370 Hb_000061_370 Hb_015746_010--Hb_000061_370 Hb_004577_020--Hb_011671_430 Hb_010417_080 Hb_010417_080 Hb_004577_020--Hb_010417_080 Hb_000853_350 Hb_000853_350 Hb_004577_020--Hb_000853_350 Hb_001936_020 Hb_001936_020 Hb_004577_020--Hb_001936_020 Hb_004577_020--Hb_003952_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.3622 8.86272 6.62043 5.86818 15.7062 14.2861
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.7717 15.3001 8.78447 10.1455 5.85256

CAGE analysis