Hb_000853_220

Information

Type -
Description -
Location Contig853: 177172-179168
Sequence    

Annotation

kegg
ID rcu:RCOM_1047720
description cytidine deaminase 1, 2, 7, putative (EC:3.5.4.5)
nr
ID XP_012082834.1
description PREDICTED: cytidine deaminase 1 [Jatropha curcas]
swissprot
ID O65896
description Cytidine deaminase 1 OS=Arabidopsis thaliana GN=CDA1 PE=1 SV=1
trembl
ID A0A067K8V8
description Cytidine deaminase OS=Jatropha curcas GN=JCGZ_13980 PE=3 SV=1
Gene Ontology
ID GO:0005634
description cytidine deaminase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000853_220 0.0 - - PREDICTED: cytidine deaminase 1 [Jatropha curcas]
2 Hb_013405_180 0.112712932 - - PREDICTED: uncharacterized protein LOC105648441 [Jatropha curcas]
3 Hb_001396_070 0.1161375695 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002248_130 0.1167128205 - - ubiquitin ligase protein cop1, putative [Ricinus communis]
5 Hb_006615_030 0.1176472148 - - prolyl oligopeptidase family protein [Populus trichocarpa]
6 Hb_011930_100 0.1183524449 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
7 Hb_002248_120 0.1262547052 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
8 Hb_000008_280 0.1269589057 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
9 Hb_000358_200 0.1278444581 - - PREDICTED: uncharacterized protein LOC105637771 [Jatropha curcas]
10 Hb_004116_180 0.1307080002 - - PREDICTED: uncharacterized protein LOC105646147 [Jatropha curcas]
11 Hb_000603_190 0.1313726728 - - PREDICTED: serine/arginine repetitive matrix protein 2-like [Jatropha curcas]
12 Hb_172421_010 0.1335677275 - - cysteine protease [Hevea brasiliensis]
13 Hb_003895_020 0.1345161334 - - PREDICTED: dedicator of cytokinesis protein 7 isoform X2 [Jatropha curcas]
14 Hb_003849_220 0.1362065766 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Jatropha curcas]
15 Hb_001911_010 0.1363726499 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
16 Hb_000270_230 0.1364515137 - - PREDICTED: probable beta-1,3-galactosyltransferase 19 [Jatropha curcas]
17 Hb_005736_050 0.1374618495 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Jatropha curcas]
18 Hb_003540_250 0.1382582489 - - PREDICTED: uncharacterized protein LOC105649465 isoform X2 [Jatropha curcas]
19 Hb_020805_100 0.138736878 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1b [Jatropha curcas]
20 Hb_004970_180 0.1389791685 - - -

Gene co-expression network

sample Hb_000853_220 Hb_000853_220 Hb_013405_180 Hb_013405_180 Hb_000853_220--Hb_013405_180 Hb_001396_070 Hb_001396_070 Hb_000853_220--Hb_001396_070 Hb_002248_130 Hb_002248_130 Hb_000853_220--Hb_002248_130 Hb_006615_030 Hb_006615_030 Hb_000853_220--Hb_006615_030 Hb_011930_100 Hb_011930_100 Hb_000853_220--Hb_011930_100 Hb_002248_120 Hb_002248_120 Hb_000853_220--Hb_002248_120 Hb_013405_180--Hb_002248_120 Hb_000008_280 Hb_000008_280 Hb_013405_180--Hb_000008_280 Hb_000170_160 Hb_000170_160 Hb_013405_180--Hb_000170_160 Hb_000340_360 Hb_000340_360 Hb_013405_180--Hb_000340_360 Hb_001998_210 Hb_001998_210 Hb_013405_180--Hb_001998_210 Hb_001951_100 Hb_001951_100 Hb_013405_180--Hb_001951_100 Hb_003925_060 Hb_003925_060 Hb_001396_070--Hb_003925_060 Hb_000640_190 Hb_000640_190 Hb_001396_070--Hb_000640_190 Hb_033152_090 Hb_033152_090 Hb_001396_070--Hb_033152_090 Hb_000603_190 Hb_000603_190 Hb_001396_070--Hb_000603_190 Hb_001396_070--Hb_011930_100 Hb_001396_070--Hb_002248_130 Hb_002248_130--Hb_006615_030 Hb_003540_250 Hb_003540_250 Hb_002248_130--Hb_003540_250 Hb_002811_040 Hb_002811_040 Hb_002248_130--Hb_002811_040 Hb_005288_140 Hb_005288_140 Hb_002248_130--Hb_005288_140 Hb_000179_190 Hb_000179_190 Hb_002248_130--Hb_000179_190 Hb_017214_040 Hb_017214_040 Hb_002248_130--Hb_017214_040 Hb_003992_180 Hb_003992_180 Hb_006615_030--Hb_003992_180 Hb_003895_020 Hb_003895_020 Hb_006615_030--Hb_003895_020 Hb_006615_030--Hb_000179_190 Hb_001911_010 Hb_001911_010 Hb_006615_030--Hb_001911_010 Hb_001410_130 Hb_001410_130 Hb_006615_030--Hb_001410_130 Hb_000045_160 Hb_000045_160 Hb_011930_100--Hb_000045_160 Hb_000815_310 Hb_000815_310 Hb_011930_100--Hb_000815_310 Hb_003777_130 Hb_003777_130 Hb_011930_100--Hb_003777_130 Hb_011930_100--Hb_000640_190 Hb_011930_100--Hb_033152_090 Hb_005885_030 Hb_005885_030 Hb_002248_120--Hb_005885_030 Hb_002248_120--Hb_001911_010 Hb_013358_060 Hb_013358_060 Hb_002248_120--Hb_013358_060 Hb_002387_040 Hb_002387_040 Hb_002248_120--Hb_002387_040 Hb_004696_070 Hb_004696_070 Hb_002248_120--Hb_004696_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.52566 28.304 13.3908 18.771 8.5442 9.25305
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.28045 4.61117 1.68351 4.92915 15.9862

CAGE analysis