Hb_000853_240

Information

Type -
Description -
Location Contig853: 188486-189067
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60490: 187555-189062
cDNA
(Sanger)
(ID:Location)		 046_I16.ab1: 187555-189062

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000853_240 0.0 - - -
2 Hb_000696_220 0.0565525035 - - PREDICTED: uncharacterized protein LOC105647113 [Jatropha curcas]
3 Hb_001386_050 0.0942958481 - - PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]
4 Hb_003198_010 0.1066133926 - - Valine--tRNA ligase [Gossypium arboreum]
5 Hb_000172_420 0.1067669272 - - 60S ribosomal protein L30, putative [Ricinus communis]
6 Hb_000963_030 0.1070438105 - - PREDICTED: uncharacterized protein LOC105628095 [Jatropha curcas]
7 Hb_000805_130 0.1098120612 - - conserved hypothetical protein [Ricinus communis]
8 Hb_007943_140 0.1120301428 - - PREDICTED: uncharacterized protein LOC103340977 [Prunus mume]
9 Hb_000175_130 0.1151082183 - - PREDICTED: PTI1-like tyrosine-protein kinase At3g15890 [Jatropha curcas]
10 Hb_004735_050 0.1180537536 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
11 Hb_008948_050 0.1181583147 - - hypothetical protein JCGZ_13339 [Jatropha curcas]
12 Hb_089100_020 0.1212793939 - - PREDICTED: cyclin-A1-1 [Jatropha curcas]
13 Hb_004007_180 0.1245849954 - - PREDICTED: uncharacterized protein LOC105639838 [Jatropha curcas]
14 Hb_000258_280 0.1256636053 - - PREDICTED: probable ran guanine nucleotide release factor [Jatropha curcas]
15 Hb_011689_050 0.1259006907 - - hypothetical protein POPTR_0008s20290g [Populus trichocarpa]
16 Hb_000032_350 0.1262276605 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007575_070 0.1262714988 - - Histone H3.2 [Glycine soja]
18 Hb_004755_030 0.1275784406 - - EG964 [Manihot glaziovii]
19 Hb_003549_020 0.1280733518 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000789_110 0.1308852299 - - RecName: Full=Profilin-1; AltName: Full=Pollen allergen Hev b 8.0101; AltName: Allergen=Hev b 8.0101 [Hevea brasiliensis]

Gene co-expression network

sample Hb_000853_240 Hb_000853_240 Hb_000696_220 Hb_000696_220 Hb_000853_240--Hb_000696_220 Hb_001386_050 Hb_001386_050 Hb_000853_240--Hb_001386_050 Hb_003198_010 Hb_003198_010 Hb_000853_240--Hb_003198_010 Hb_000172_420 Hb_000172_420 Hb_000853_240--Hb_000172_420 Hb_000963_030 Hb_000963_030 Hb_000853_240--Hb_000963_030 Hb_000805_130 Hb_000805_130 Hb_000853_240--Hb_000805_130 Hb_000696_220--Hb_003198_010 Hb_089100_020 Hb_089100_020 Hb_000696_220--Hb_089100_020 Hb_000032_350 Hb_000032_350 Hb_000696_220--Hb_000032_350 Hb_000696_220--Hb_000963_030 Hb_000696_220--Hb_001386_050 Hb_008948_050 Hb_008948_050 Hb_001386_050--Hb_008948_050 Hb_000878_020 Hb_000878_020 Hb_001386_050--Hb_000878_020 Hb_002344_070 Hb_002344_070 Hb_001386_050--Hb_002344_070 Hb_006588_080 Hb_006588_080 Hb_001386_050--Hb_006588_080 Hb_001386_050--Hb_000805_130 Hb_003198_010--Hb_089100_020 Hb_003198_010--Hb_001386_050 Hb_003181_050 Hb_003181_050 Hb_003198_010--Hb_003181_050 Hb_003198_010--Hb_000032_350 Hb_002248_100 Hb_002248_100 Hb_000172_420--Hb_002248_100 Hb_000172_420--Hb_006588_080 Hb_000062_390 Hb_000062_390 Hb_000172_420--Hb_000062_390 Hb_000635_080 Hb_000635_080 Hb_000172_420--Hb_000635_080 Hb_000270_720 Hb_000270_720 Hb_000172_420--Hb_000270_720 Hb_000172_420--Hb_008948_050 Hb_011689_050 Hb_011689_050 Hb_000963_030--Hb_011689_050 Hb_007943_140 Hb_007943_140 Hb_000963_030--Hb_007943_140 Hb_000963_030--Hb_000172_420 Hb_000963_030--Hb_002248_100 Hb_026398_010 Hb_026398_010 Hb_000963_030--Hb_026398_010 Hb_000963_030--Hb_000805_130 Hb_007575_070 Hb_007575_070 Hb_000805_130--Hb_007575_070 Hb_001634_040 Hb_001634_040 Hb_000805_130--Hb_001634_040 Hb_000805_130--Hb_000172_420 Hb_000805_130--Hb_000062_390 Hb_000805_130--Hb_008948_050 Hb_076626_010 Hb_076626_010 Hb_000805_130--Hb_076626_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.13477 1.9855 3.62913 5.03178 3.99419 5.9143
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.7227 57.9821 13.4117 2.95162 1.72143

CAGE analysis