Hb_000853_250

Information

Type -
Description -
Location Contig853: 191791-195745
Sequence    

Annotation

kegg
ID rcu:RCOM_1180270
description Cellulose synthase A catalytic subunit 3 [UDP-forming], putative (EC:2.4.1.12)
nr
ID XP_002523143.1
description Cellulose synthase A catalytic subunit 3 [UDP-forming], putative [Ricinus communis]
swissprot
ID Q9SRW9
description Cellulose synthase-like protein D5 OS=Arabidopsis thaliana GN=CSLD5 PE=2 SV=1
trembl
ID B9SAX4
description Cellulose synthase A catalytic subunit 3 [UDP-forming], putative OS=Ricinus communis GN=RCOM_1180270 PE=4 SV=1
Gene Ontology
ID GO:0016021
description cellulose synthase-like protein d5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60491: 191691-196046
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000853_250 0.0 - - Cellulose synthase A catalytic subunit 3 [UDP-forming], putative [Ricinus communis]
2 Hb_001141_440 0.0711807792 - - PREDICTED: uncharacterized protein LOC105631977 [Jatropha curcas]
3 Hb_000062_280 0.0871060382 - - plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]
4 Hb_004055_090 0.0944785944 - - PREDICTED: protein IQ-DOMAIN 1 [Jatropha curcas]
5 Hb_000162_190 0.1011972579 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
6 Hb_000017_250 0.1057664795 - - PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Jatropha curcas]
7 Hb_025787_020 0.1071302244 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
8 Hb_085829_010 0.1078164019 - - PREDICTED: homeobox protein 2-like [Jatropha curcas]
9 Hb_000506_050 0.1117930951 - - PREDICTED: thymidine kinase [Jatropha curcas]
10 Hb_000093_090 0.1135471495 - - PREDICTED: UDP-arabinopyranose mutase 3 [Populus euphratica]
11 Hb_004705_060 0.1169795637 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
12 Hb_149882_010 0.1215014107 - - PREDICTED: probable receptor protein kinase TMK1 [Populus euphratica]
13 Hb_000345_230 0.1242517514 - - -
14 Hb_009252_080 0.1246819988 - - Polygalacturonase-1 non-catalytic subunit beta precursor, putative [Ricinus communis]
15 Hb_000020_050 0.1249246048 - - PREDICTED: expansin-A6 [Jatropha curcas]
16 Hb_001052_020 0.1250268685 - - hypothetical protein JCGZ_26487 [Jatropha curcas]
17 Hb_001971_040 0.1279134238 - - PREDICTED: beta-glucosidase 44-like [Jatropha curcas]
18 Hb_002224_020 0.1291089604 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
19 Hb_001213_060 0.1312205839 - - PREDICTED: uncharacterized protein LOC105646662 [Jatropha curcas]
20 Hb_000977_190 0.1312875634 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000853_250 Hb_000853_250 Hb_001141_440 Hb_001141_440 Hb_000853_250--Hb_001141_440 Hb_000062_280 Hb_000062_280 Hb_000853_250--Hb_000062_280 Hb_004055_090 Hb_004055_090 Hb_000853_250--Hb_004055_090 Hb_000162_190 Hb_000162_190 Hb_000853_250--Hb_000162_190 Hb_000017_250 Hb_000017_250 Hb_000853_250--Hb_000017_250 Hb_025787_020 Hb_025787_020 Hb_000853_250--Hb_025787_020 Hb_001141_440--Hb_000162_190 Hb_000345_230 Hb_000345_230 Hb_001141_440--Hb_000345_230 Hb_001971_040 Hb_001971_040 Hb_001141_440--Hb_001971_040 Hb_001141_440--Hb_000062_280 Hb_009252_080 Hb_009252_080 Hb_001141_440--Hb_009252_080 Hb_001052_020 Hb_001052_020 Hb_000062_280--Hb_001052_020 Hb_165110_010 Hb_165110_010 Hb_000062_280--Hb_165110_010 Hb_000962_060 Hb_000962_060 Hb_000062_280--Hb_000962_060 Hb_000506_050 Hb_000506_050 Hb_000062_280--Hb_000506_050 Hb_000522_160 Hb_000522_160 Hb_004055_090--Hb_000522_160 Hb_003754_020 Hb_003754_020 Hb_004055_090--Hb_003754_020 Hb_004055_090--Hb_000345_230 Hb_002276_250 Hb_002276_250 Hb_004055_090--Hb_002276_250 Hb_000977_190 Hb_000977_190 Hb_004055_090--Hb_000977_190 Hb_003935_040 Hb_003935_040 Hb_000162_190--Hb_003935_040 Hb_000162_190--Hb_025787_020 Hb_000162_190--Hb_009252_080 Hb_043552_010 Hb_043552_010 Hb_000162_190--Hb_043552_010 Hb_000310_110 Hb_000310_110 Hb_000162_190--Hb_000310_110 Hb_002701_030 Hb_002701_030 Hb_000017_250--Hb_002701_030 Hb_004705_060 Hb_004705_060 Hb_000017_250--Hb_004705_060 Hb_085829_010 Hb_085829_010 Hb_000017_250--Hb_085829_010 Hb_000017_250--Hb_000162_190 Hb_000017_250--Hb_025787_020 Hb_025787_020--Hb_009252_080 Hb_001140_300 Hb_001140_300 Hb_025787_020--Hb_001140_300 Hb_001056_040 Hb_001056_040 Hb_025787_020--Hb_001056_040 Hb_025787_020--Hb_000345_230 Hb_001709_090 Hb_001709_090 Hb_025787_020--Hb_001709_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0286286 0.311351 7.88367 15.6259 0.165131 0.0198345
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0123904 0.00975059 0 2.36878 1.93963

CAGE analysis