Hb_000853_280

Information

Type -
Description -
Location Contig853: 215919-216470
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_012082845.1
description PREDICTED: extensin-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JZN6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13989 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000853_280 0.0 - - PREDICTED: extensin-like [Jatropha curcas]
2 Hb_007933_010 0.0114171469 - - ATP-binding cassette transporter, putative [Ricinus communis]
3 Hb_003120_090 0.0409004968 - - PREDICTED: uncharacterized protein LOC100264374 [Vitis vinifera]
4 Hb_002093_010 0.0459081758 - - PREDICTED: non-symbiotic hemoglobin 2 [Jatropha curcas]
5 Hb_002704_090 0.0552668362 - - cytochrome P450, putative [Ricinus communis]
6 Hb_005018_050 0.0577833905 - - PREDICTED: licodione synthase-like [Jatropha curcas]
7 Hb_000627_060 0.058456301 - - -
8 Hb_003053_090 0.0606981851 - - PREDICTED: carbonic anhydrase, chloroplastic-like [Jatropha curcas]
9 Hb_015981_010 0.061147925 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_003407_050 0.0643633327 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
11 Hb_006495_030 0.0652468067 - - PREDICTED: isoflavone 2'-hydroxylase-like [Vitis vinifera]
12 Hb_007741_060 0.0656627269 - - PREDICTED: putative lipid-binding protein At4g00165 [Jatropha curcas]
13 Hb_006435_020 0.0663389667 - - sugar transporter, putative [Ricinus communis]
14 Hb_031194_030 0.0676945316 - - ribulose 1,5-bisphosphate carboxylase/oxygenase [Stackhousia minima]
15 Hb_006040_090 0.0688523314 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Hevea brasiliensis]
16 Hb_020859_010 0.0702201581 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X6 [Populus euphratica]
17 Hb_003053_100 0.0707725606 transcription factor TF Family: MYB-related PREDICTED: transcription factor WER-like [Jatropha curcas]
18 Hb_088080_010 0.0742120303 - - photosystem I P700 chlorophyll a apoprotein A1 [Matelea biflora]
19 Hb_002040_070 0.076237005 - - -
20 Hb_004150_020 0.0785646228 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]

Gene co-expression network

sample Hb_000853_280 Hb_000853_280 Hb_007933_010 Hb_007933_010 Hb_000853_280--Hb_007933_010 Hb_003120_090 Hb_003120_090 Hb_000853_280--Hb_003120_090 Hb_002093_010 Hb_002093_010 Hb_000853_280--Hb_002093_010 Hb_002704_090 Hb_002704_090 Hb_000853_280--Hb_002704_090 Hb_005018_050 Hb_005018_050 Hb_000853_280--Hb_005018_050 Hb_000627_060 Hb_000627_060 Hb_000853_280--Hb_000627_060 Hb_007933_010--Hb_003120_090 Hb_007933_010--Hb_002093_010 Hb_007933_010--Hb_002704_090 Hb_007933_010--Hb_000627_060 Hb_007933_010--Hb_005018_050 Hb_003120_090--Hb_005018_050 Hb_003407_050 Hb_003407_050 Hb_003120_090--Hb_003407_050 Hb_003120_090--Hb_002704_090 Hb_031194_030 Hb_031194_030 Hb_003120_090--Hb_031194_030 Hb_002093_010--Hb_000627_060 Hb_002093_010--Hb_002704_090 Hb_007741_060 Hb_007741_060 Hb_002093_010--Hb_007741_060 Hb_006435_020 Hb_006435_020 Hb_002093_010--Hb_006435_020 Hb_002093_010--Hb_003120_090 Hb_002704_090--Hb_000627_060 Hb_002704_090--Hb_005018_050 Hb_002704_090--Hb_031194_030 Hb_005018_050--Hb_003407_050 Hb_005018_050--Hb_031194_030 Hb_088080_010 Hb_088080_010 Hb_005018_050--Hb_088080_010 Hb_000627_060--Hb_007741_060 Hb_000627_060--Hb_006435_020 Hb_004567_080 Hb_004567_080 Hb_000627_060--Hb_004567_080 Hb_004643_030 Hb_004643_030 Hb_000627_060--Hb_004643_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 5.48575 1.21832 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 70.0904

CAGE analysis