Hb_000853_330

Information

Type -
Description -
Location Contig853: 239407-245988
Sequence    

Annotation

kegg
ID tcc:TCM_004757
description Importin alpha, ALPHA,AIMP ALPHA isoform 1
nr
ID XP_012082851.1
description PREDICTED: importin subunit alpha-like [Jatropha curcas]
swissprot
ID O22478
description Importin subunit alpha OS=Solanum lycopersicum PE=2 SV=2
trembl
ID A0A067JWJ7
description Importin subunit alpha OS=Jatropha curcas GN=JCGZ_13993 PE=3 SV=1
Gene Ontology
ID GO:0005634
description importin subunit alpha-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60496: 239400-242302 , PASA_asmbl_60497: 242696-245814
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000853_330 0.0 - - PREDICTED: importin subunit alpha-like [Jatropha curcas]
2 Hb_001059_060 0.0716064086 - - PREDICTED: bifunctional riboflavin kinase/FMN phosphatase [Jatropha curcas]
3 Hb_000197_180 0.0817305402 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase 1 [Jatropha curcas]
4 Hb_009078_020 0.0846885055 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
5 Hb_010407_030 0.1028086481 - - PREDICTED: casein kinase I-like [Jatropha curcas]
6 Hb_006949_060 0.1032471649 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
7 Hb_000375_060 0.1121016838 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like [Jatropha curcas]
8 Hb_011188_010 0.1129832823 - - PREDICTED: uncharacterized protein LOC105642145 isoform X1 [Jatropha curcas]
9 Hb_001999_320 0.115873728 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA [Jatropha curcas]
10 Hb_000622_330 0.1160410158 - - PREDICTED: uncharacterized protein LOC105642906 [Jatropha curcas]
11 Hb_001878_060 0.1179999061 transcription factor TF Family: G2-like hypothetical protein POPTR_0007s15110g [Populus trichocarpa]
12 Hb_002739_120 0.1189266935 - - PREDICTED: zinc finger protein ZPR1-like [Jatropha curcas]
13 Hb_001998_210 0.1191503622 - - unnamed protein product [Coffea canephora]
14 Hb_004052_110 0.1192178478 - - PREDICTED: host cell factor 2 isoform X1 [Jatropha curcas]
15 Hb_000094_150 0.1219206892 - - -
16 Hb_002217_080 0.1220428772 - - PREDICTED: probable beta-1,3-galactosyltransferase 16 [Jatropha curcas]
17 Hb_000227_320 0.1234176998 - - unnamed protein product [Vitis vinifera]
18 Hb_002909_100 0.1254901224 - - PREDICTED: uncharacterized protein LOC105648153 [Jatropha curcas]
19 Hb_000098_180 0.1263471549 - - PREDICTED: uncharacterized protein LOC105633342 isoform X2 [Jatropha curcas]
20 Hb_000979_140 0.1276574031 - - kinase family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000853_330 Hb_000853_330 Hb_001059_060 Hb_001059_060 Hb_000853_330--Hb_001059_060 Hb_000197_180 Hb_000197_180 Hb_000853_330--Hb_000197_180 Hb_009078_020 Hb_009078_020 Hb_000853_330--Hb_009078_020 Hb_010407_030 Hb_010407_030 Hb_000853_330--Hb_010407_030 Hb_006949_060 Hb_006949_060 Hb_000853_330--Hb_006949_060 Hb_000375_060 Hb_000375_060 Hb_000853_330--Hb_000375_060 Hb_001059_060--Hb_009078_020 Hb_004052_110 Hb_004052_110 Hb_001059_060--Hb_004052_110 Hb_011188_010 Hb_011188_010 Hb_001059_060--Hb_011188_010 Hb_001998_210 Hb_001998_210 Hb_001059_060--Hb_001998_210 Hb_001439_070 Hb_001439_070 Hb_001059_060--Hb_001439_070 Hb_002739_120 Hb_002739_120 Hb_000197_180--Hb_002739_120 Hb_000979_140 Hb_000979_140 Hb_000197_180--Hb_000979_140 Hb_004375_110 Hb_004375_110 Hb_000197_180--Hb_004375_110 Hb_060094_010 Hb_060094_010 Hb_000197_180--Hb_060094_010 Hb_002349_030 Hb_002349_030 Hb_000197_180--Hb_002349_030 Hb_009078_020--Hb_011188_010 Hb_009078_020--Hb_001998_210 Hb_002809_160 Hb_002809_160 Hb_009078_020--Hb_002809_160 Hb_001408_020 Hb_001408_020 Hb_009078_020--Hb_001408_020 Hb_010407_030--Hb_006949_060 Hb_010381_020 Hb_010381_020 Hb_010407_030--Hb_010381_020 Hb_010407_030--Hb_002739_120 Hb_001009_150 Hb_001009_150 Hb_010407_030--Hb_001009_150 Hb_005854_040 Hb_005854_040 Hb_010407_030--Hb_005854_040 Hb_010407_030--Hb_009078_020 Hb_000227_320 Hb_000227_320 Hb_006949_060--Hb_000227_320 Hb_132840_030 Hb_132840_030 Hb_006949_060--Hb_132840_030 Hb_000950_040 Hb_000950_040 Hb_006949_060--Hb_000950_040 Hb_006949_060--Hb_001009_150 Hb_002316_170 Hb_002316_170 Hb_006949_060--Hb_002316_170 Hb_000375_060--Hb_000979_140 Hb_005064_070 Hb_005064_070 Hb_000375_060--Hb_005064_070 Hb_054865_050 Hb_054865_050 Hb_000375_060--Hb_054865_050 Hb_001729_020 Hb_001729_020 Hb_000375_060--Hb_001729_020 Hb_000098_180 Hb_000098_180 Hb_000375_060--Hb_000098_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.363714 3.31635 3.7426 4.31265 0.628577 1.11644
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.609518 0.744204 0.282721 1.96611 2.97622

CAGE analysis