Hb_000853_340

Information

Type -
Description -
Location Contig853: 247703-248890
Sequence    

Annotation

kegg
ID pop:POPTR_0014s11910g
description POPTRDRAFT_245660; hypothetical protein
nr
ID XP_011041670.1
description PREDICTED: kynurenine--oxoglutarate transaminase 1-like isoform X2 [Populus euphratica]
swissprot
ID Q71RI9
description Kynurenine--oxoglutarate transaminase 3 OS=Mus musculus GN=Ccbl2 PE=1 SV=1
trembl
ID A0A067L3K2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26796 PE=3 SV=1
Gene Ontology
ID GO:0003824
description kynurenine--oxoglutarate transaminase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000853_340 0.0 - - PREDICTED: kynurenine--oxoglutarate transaminase 1-like isoform X2 [Populus euphratica]
2 Hb_019762_030 0.0313418134 - - hypothetical protein POPTR_0002s08720g [Populus trichocarpa]
3 Hb_155874_020 0.034754256 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
4 Hb_003702_010 0.0475717657 - - PREDICTED: phospholipase A1-II 1-like [Jatropha curcas]
5 Hb_008195_100 0.0527995129 transcription factor TF Family: C2C2-YABBY PREDICTED: protein YABBY 4 [Vitis vinifera]
6 Hb_000023_170 0.0593873943 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Jatropha curcas]
7 Hb_132840_060 0.0614772583 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH57-like [Jatropha curcas]
8 Hb_000173_330 0.0616461213 - - PREDICTED: glutamine synthetase leaf isozyme, chloroplastic [Vitis vinifera]
9 Hb_009189_090 0.070721286 - - protein phosphatase-2c, putative [Ricinus communis]
10 Hb_008032_010 0.0768369699 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
11 Hb_017358_060 0.0789418638 - - PREDICTED: uncharacterized protein LOC105641510 [Jatropha curcas]
12 Hb_063584_010 0.0838442532 - - hypothetical protein JCGZ_10530 [Jatropha curcas]
13 Hb_005198_010 0.084177748 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 5 [Jatropha curcas]
14 Hb_003729_050 0.0869389411 - - PREDICTED: vacuolar iron transporter 1-like isoform X1 [Jatropha curcas]
15 Hb_001329_060 0.0870177081 - - Polygalacturonase precursor, putative [Ricinus communis]
16 Hb_002235_260 0.0876254329 transcription factor TF Family: MYB hypothetical protein POPTR_0017s12230g [Populus trichocarpa]
17 Hb_000465_110 0.0896410245 transcription factor TF Family: MYB PREDICTED: myb-related protein 330-like [Jatropha curcas]
18 Hb_005357_210 0.0899247288 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein MERISTEM L1 [Jatropha curcas]
19 Hb_006649_100 0.0904017851 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
20 Hb_004117_060 0.0921399699 - - PREDICTED: GDSL esterase/lipase At1g33811 [Jatropha curcas]

Gene co-expression network

sample Hb_000853_340 Hb_000853_340 Hb_019762_030 Hb_019762_030 Hb_000853_340--Hb_019762_030 Hb_155874_020 Hb_155874_020 Hb_000853_340--Hb_155874_020 Hb_003702_010 Hb_003702_010 Hb_000853_340--Hb_003702_010 Hb_008195_100 Hb_008195_100 Hb_000853_340--Hb_008195_100 Hb_000023_170 Hb_000023_170 Hb_000853_340--Hb_000023_170 Hb_132840_060 Hb_132840_060 Hb_000853_340--Hb_132840_060 Hb_005198_010 Hb_005198_010 Hb_019762_030--Hb_005198_010 Hb_002235_260 Hb_002235_260 Hb_019762_030--Hb_002235_260 Hb_004117_060 Hb_004117_060 Hb_019762_030--Hb_004117_060 Hb_019762_030--Hb_155874_020 Hb_019762_030--Hb_003702_010 Hb_155874_020--Hb_132840_060 Hb_155874_020--Hb_003702_010 Hb_155874_020--Hb_000023_170 Hb_155874_020--Hb_008195_100 Hb_008032_010 Hb_008032_010 Hb_155874_020--Hb_008032_010 Hb_003702_010--Hb_000023_170 Hb_009189_090 Hb_009189_090 Hb_003702_010--Hb_009189_090 Hb_003702_010--Hb_132840_060 Hb_005357_210 Hb_005357_210 Hb_003702_010--Hb_005357_210 Hb_008195_100--Hb_003702_010 Hb_008195_100--Hb_000023_170 Hb_008195_100--Hb_132840_060 Hb_008195_100--Hb_009189_090 Hb_000023_170--Hb_009189_090 Hb_000023_170--Hb_132840_060 Hb_000023_170--Hb_008032_010 Hb_000023_170--Hb_005357_210 Hb_132840_060--Hb_008032_010 Hb_003729_050 Hb_003729_050 Hb_132840_060--Hb_003729_050 Hb_132840_060--Hb_009189_090 Hb_006355_100 Hb_006355_100 Hb_132840_060--Hb_006355_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.929548 0.0673823 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.187041

CAGE analysis