Hb_000853_360

Information

Type transcription factor
Description TF Family: C2H2
Location Contig853: 270548-271120
Sequence    

Annotation

kegg
ID pop:POPTR_0002s20020g
description POPTRDRAFT_552499; hypothetical protein
nr
ID XP_012083798.1
description PREDICTED: zinc finger protein 5-like [Jatropha curcas]
swissprot
ID Q39265
description Zinc finger protein 6 OS=Arabidopsis thaliana GN=ZFP6 PE=2 SV=1
trembl
ID A0A067K7K5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13996 PE=4 SV=1
Gene Ontology
ID GO:0005488
description zinc finger protein 6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000853_360 0.0 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 5-like [Jatropha curcas]
2 Hb_006132_050 0.0921431404 - - hypothetical protein EUTSA_v10028860mg [Eutrema salsugineum]
3 Hb_005276_100 0.1138519711 - - PREDICTED: uncharacterized protein LOC105640215 [Jatropha curcas]
4 Hb_002326_180 0.1199521633 - - Protein Z, putative [Ricinus communis]
5 Hb_000617_050 0.1374902958 - - PREDICTED: uncharacterized protein LOC105647466 [Jatropha curcas]
6 Hb_001616_020 0.14912381 - - PREDICTED: wound-induced basic protein [Jatropha curcas]
7 Hb_000106_090 0.150427344 - - PREDICTED: uncharacterized protein LOC105634795 [Jatropha curcas]
8 Hb_001621_180 0.1539050369 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-1 [Jatropha curcas]
9 Hb_010594_030 0.1552783296 - - -
10 Hb_034585_040 0.1559576667 - - PREDICTED: nuclear pore complex protein NUP58 [Jatropha curcas]
11 Hb_010362_020 0.1570187945 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 38-like [Jatropha curcas]
12 Hb_000777_060 0.1586293687 - - conserved hypothetical protein [Ricinus communis]
13 Hb_011689_050 0.1611640421 - - hypothetical protein POPTR_0008s20290g [Populus trichocarpa]
14 Hb_151930_020 0.161268427 - - Wound-induced protein WIN1 precursor, putative [Ricinus communis]
15 Hb_000032_260 0.1631942947 - - PREDICTED: probable protein phosphatase 2C 51 [Jatropha curcas]
16 Hb_000599_090 0.1656811126 - - hypothetical protein POPTR_0002s039001g, partial [Populus trichocarpa]
17 Hb_005396_080 0.1662056587 - - PREDICTED: nudix hydrolase 1 [Jatropha curcas]
18 Hb_005615_070 0.1673059265 - - Rab7 [Hevea brasiliensis]
19 Hb_001198_030 0.1690295965 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
20 Hb_000143_050 0.1692451958 - - PREDICTED: MFP1 attachment factor 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000853_360 Hb_000853_360 Hb_006132_050 Hb_006132_050 Hb_000853_360--Hb_006132_050 Hb_005276_100 Hb_005276_100 Hb_000853_360--Hb_005276_100 Hb_002326_180 Hb_002326_180 Hb_000853_360--Hb_002326_180 Hb_000617_050 Hb_000617_050 Hb_000853_360--Hb_000617_050 Hb_001616_020 Hb_001616_020 Hb_000853_360--Hb_001616_020 Hb_000106_090 Hb_000106_090 Hb_000853_360--Hb_000106_090 Hb_006132_050--Hb_000106_090 Hb_006132_050--Hb_002326_180 Hb_006132_050--Hb_000617_050 Hb_000777_060 Hb_000777_060 Hb_006132_050--Hb_000777_060 Hb_006132_050--Hb_001616_020 Hb_000143_050 Hb_000143_050 Hb_005276_100--Hb_000143_050 Hb_000580_160 Hb_000580_160 Hb_005276_100--Hb_000580_160 Hb_000032_260 Hb_000032_260 Hb_005276_100--Hb_000032_260 Hb_000061_160 Hb_000061_160 Hb_005276_100--Hb_000061_160 Hb_001621_180 Hb_001621_180 Hb_005276_100--Hb_001621_180 Hb_002326_180--Hb_000617_050 Hb_002326_180--Hb_000106_090 Hb_001123_120 Hb_001123_120 Hb_002326_180--Hb_001123_120 Hb_000676_240 Hb_000676_240 Hb_002326_180--Hb_000676_240 Hb_002045_230 Hb_002045_230 Hb_002326_180--Hb_002045_230 Hb_002876_360 Hb_002876_360 Hb_002326_180--Hb_002876_360 Hb_000617_050--Hb_002876_360 Hb_003638_080 Hb_003638_080 Hb_000617_050--Hb_003638_080 Hb_003216_100 Hb_003216_100 Hb_000617_050--Hb_003216_100 Hb_009252_130 Hb_009252_130 Hb_000617_050--Hb_009252_130 Hb_004005_010 Hb_004005_010 Hb_000617_050--Hb_004005_010 Hb_001616_020--Hb_009252_130 Hb_011689_050 Hb_011689_050 Hb_001616_020--Hb_011689_050 Hb_004958_050 Hb_004958_050 Hb_001616_020--Hb_004958_050 Hb_002234_210 Hb_002234_210 Hb_001616_020--Hb_002234_210 Hb_000144_110 Hb_000144_110 Hb_001616_020--Hb_000144_110 Hb_151930_020 Hb_151930_020 Hb_001616_020--Hb_151930_020 Hb_000352_140 Hb_000352_140 Hb_000106_090--Hb_000352_140 Hb_000106_090--Hb_002045_230 Hb_000106_090--Hb_002876_360 Hb_000599_090 Hb_000599_090 Hb_000106_090--Hb_000599_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
124.787 29.3136 0.219889 4.11266 112.555 86.3325
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
189.167 483.128 126.42 43.686 0.816582

CAGE analysis