Hb_000853_380

Information

Type -
Description -
Location Contig853: 273742-274313
Sequence    

Annotation

kegg
ID rcu:RCOM_1347990
description hypothetical protein
nr
ID XP_002515316.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RNH7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1347990 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000853_380 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000457_040 0.2189202074 - - -
3 Hb_107500_010 0.2261002043 - - -
4 Hb_001798_040 0.3010495118 transcription factor TF Family: NAC hypothetical protein ARALYDRAFT_918808 [Arabidopsis lyrata subsp. lyrata]
5 Hb_001268_100 0.3086156651 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein KNUCKLES [Jatropha curcas]
6 Hb_004724_350 0.3149131892 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005524_010 0.3236787791 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
8 Hb_004414_040 0.3417027243 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
9 Hb_012725_010 0.3579695488 - - -
10 Hb_002014_110 0.3622273382 - - -
11 Hb_012799_090 0.369937115 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Jatropha curcas]
12 Hb_019654_160 0.3701979569 - - Zinc finger protein GIS2 [Medicago truncatula]
13 Hb_002784_140 0.3725915723 - - glutamate receptor 2 plant, putative [Ricinus communis]
14 Hb_005772_010 0.3741971617 - - PREDICTED: abscisic acid receptor PYL4 [Jatropha curcas]
15 Hb_000427_060 0.3750650838 - - -
16 Hb_001541_240 0.3775690819 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005048_060 0.3804376659 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002185_010 0.3811956241 - - PREDICTED: uncharacterized protein LOC105795658 [Gossypium raimondii]
19 Hb_049415_010 0.3831536464 - - -
20 Hb_000563_310 0.3863657294 transcription factor TF Family: ERF ethylene-responsive transcription factor 3 [Hevea brasiliensis]

Gene co-expression network

sample Hb_000853_380 Hb_000853_380 Hb_000457_040 Hb_000457_040 Hb_000853_380--Hb_000457_040 Hb_107500_010 Hb_107500_010 Hb_000853_380--Hb_107500_010 Hb_001798_040 Hb_001798_040 Hb_000853_380--Hb_001798_040 Hb_001268_100 Hb_001268_100 Hb_000853_380--Hb_001268_100 Hb_004724_350 Hb_004724_350 Hb_000853_380--Hb_004724_350 Hb_005524_010 Hb_005524_010 Hb_000853_380--Hb_005524_010 Hb_002185_010 Hb_002185_010 Hb_000457_040--Hb_002185_010 Hb_000457_040--Hb_107500_010 Hb_000457_040--Hb_001268_100 Hb_000326_020 Hb_000326_020 Hb_000457_040--Hb_000326_020 Hb_032533_010 Hb_032533_010 Hb_000457_040--Hb_032533_010 Hb_107500_010--Hb_001268_100 Hb_107500_010--Hb_004724_350 Hb_134310_030 Hb_134310_030 Hb_107500_010--Hb_134310_030 Hb_002016_160 Hb_002016_160 Hb_107500_010--Hb_002016_160 Hb_001798_040--Hb_005524_010 Hb_003812_010 Hb_003812_010 Hb_001798_040--Hb_003812_010 Hb_012656_010 Hb_012656_010 Hb_001798_040--Hb_012656_010 Hb_001263_020 Hb_001263_020 Hb_001798_040--Hb_001263_020 Hb_000487_390 Hb_000487_390 Hb_001798_040--Hb_000487_390 Hb_001754_220 Hb_001754_220 Hb_001798_040--Hb_001754_220 Hb_001268_100--Hb_134310_030 Hb_122873_010 Hb_122873_010 Hb_001268_100--Hb_122873_010 Hb_001268_100--Hb_004724_350 Hb_002257_020 Hb_002257_020 Hb_001268_100--Hb_002257_020 Hb_012725_010 Hb_012725_010 Hb_004724_350--Hb_012725_010 Hb_004724_350--Hb_122873_010 Hb_038098_010 Hb_038098_010 Hb_004724_350--Hb_038098_010 Hb_049415_010 Hb_049415_010 Hb_004724_350--Hb_049415_010 Hb_005524_010--Hb_000457_040 Hb_005524_010--Hb_000487_390 Hb_005524_010--Hb_001263_020 Hb_005524_010--Hb_012656_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0638251 0.066586 0 0 0.0600784 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.353375 0 0 0

CAGE analysis