Hb_000853_410

Information

Type -
Description -
Location Contig853: 290300-298546
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000853_410 0.0 - - -
2 Hb_168905_010 0.139322765 - - PREDICTED: AP-1 complex subunit sigma-1 isoform X2 [Cicer arietinum]
3 Hb_001159_120 0.1416655054 - - PREDICTED: uncharacterized protein LOC105645945 [Jatropha curcas]
4 Hb_005000_070 0.1477747626 - - hypothetical protein POPTR_0012s01650g [Populus trichocarpa]
5 Hb_000210_220 0.1481855472 - - hypothetical protein POPTR_0006s22010g [Populus trichocarpa]
6 Hb_061802_010 0.1516508795 - - hypothetical protein VITISV_011986 [Vitis vinifera]
7 Hb_009113_070 0.1558685058 - - hypothetical protein POPTR_0010s07510g [Populus trichocarpa]
8 Hb_009393_210 0.1563855067 - - PREDICTED: MHC class II regulatory factor RFX1-like [Jatropha curcas]
9 Hb_001287_030 0.1570069372 - - 30S ribosomal protein S31, mitochondrial precursor, putative [Ricinus communis]
10 Hb_011909_100 0.1607258019 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001083_020 0.1613698612 - - -
12 Hb_001258_030 0.1615306048 - - tRNA-dihydrouridine synthase, putative [Ricinus communis]
13 Hb_001373_180 0.1627664338 - - PREDICTED: uncharacterized protein LOC105628780 isoform X2 [Jatropha curcas]
14 Hb_000061_300 0.1639100967 - - hypothetical protein JCGZ_11668 [Jatropha curcas]
15 Hb_071947_010 0.1669327557 - - -
16 Hb_005539_360 0.1679542632 - - kinesin light chain, putative [Ricinus communis]
17 Hb_000634_040 0.168025094 - - PREDICTED: beta-amylase 3, chloroplastic [Jatropha curcas]
18 Hb_000836_530 0.1683765599 - - PREDICTED: uncharacterized protein LOC105634429 [Jatropha curcas]
19 Hb_004586_170 0.168886334 - - hypothetical protein PRUPE_ppa011196mg [Prunus persica]
20 Hb_002235_280 0.1710950256 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15300 [Jatropha curcas]

Gene co-expression network

sample Hb_000853_410 Hb_000853_410 Hb_168905_010 Hb_168905_010 Hb_000853_410--Hb_168905_010 Hb_001159_120 Hb_001159_120 Hb_000853_410--Hb_001159_120 Hb_005000_070 Hb_005000_070 Hb_000853_410--Hb_005000_070 Hb_000210_220 Hb_000210_220 Hb_000853_410--Hb_000210_220 Hb_061802_010 Hb_061802_010 Hb_000853_410--Hb_061802_010 Hb_009113_070 Hb_009113_070 Hb_000853_410--Hb_009113_070 Hb_021443_080 Hb_021443_080 Hb_168905_010--Hb_021443_080 Hb_001218_040 Hb_001218_040 Hb_168905_010--Hb_001218_040 Hb_011671_390 Hb_011671_390 Hb_168905_010--Hb_011671_390 Hb_000997_360 Hb_000997_360 Hb_168905_010--Hb_000997_360 Hb_001616_030 Hb_001616_030 Hb_168905_010--Hb_001616_030 Hb_001153_020 Hb_001153_020 Hb_168905_010--Hb_001153_020 Hb_004586_170 Hb_004586_170 Hb_001159_120--Hb_004586_170 Hb_008623_020 Hb_008623_020 Hb_001159_120--Hb_008623_020 Hb_000120_680 Hb_000120_680 Hb_001159_120--Hb_000120_680 Hb_000563_250 Hb_000563_250 Hb_001159_120--Hb_000563_250 Hb_000617_150 Hb_000617_150 Hb_001159_120--Hb_000617_150 Hb_004306_100 Hb_004306_100 Hb_001159_120--Hb_004306_100 Hb_000230_380 Hb_000230_380 Hb_005000_070--Hb_000230_380 Hb_000429_170 Hb_000429_170 Hb_005000_070--Hb_000429_170 Hb_007924_020 Hb_007924_020 Hb_005000_070--Hb_007924_020 Hb_000622_040 Hb_000622_040 Hb_005000_070--Hb_000622_040 Hb_000061_300 Hb_000061_300 Hb_005000_070--Hb_000061_300 Hb_002056_060 Hb_002056_060 Hb_005000_070--Hb_002056_060 Hb_138585_050 Hb_138585_050 Hb_000210_220--Hb_138585_050 Hb_001083_020 Hb_001083_020 Hb_000210_220--Hb_001083_020 Hb_001491_010 Hb_001491_010 Hb_000210_220--Hb_001491_010 Hb_003349_080 Hb_003349_080 Hb_000210_220--Hb_003349_080 Hb_000210_220--Hb_061802_010 Hb_000979_200 Hb_000979_200 Hb_000210_220--Hb_000979_200 Hb_000329_180 Hb_000329_180 Hb_061802_010--Hb_000329_180 Hb_001575_020 Hb_001575_020 Hb_061802_010--Hb_001575_020 Hb_071947_010 Hb_071947_010 Hb_061802_010--Hb_071947_010 Hb_005505_020 Hb_005505_020 Hb_061802_010--Hb_005505_020 Hb_061802_010--Hb_000061_300 Hb_000398_040 Hb_000398_040 Hb_009113_070--Hb_000398_040 Hb_172932_010 Hb_172932_010 Hb_009113_070--Hb_172932_010 Hb_011534_030 Hb_011534_030 Hb_009113_070--Hb_011534_030 Hb_009113_070--Hb_000617_150 Hb_000841_020 Hb_000841_020 Hb_009113_070--Hb_000841_020 Hb_000143_030 Hb_000143_030 Hb_009113_070--Hb_000143_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0620552 0.0687457 0.0342758 0.00626221 0.093014 0.0724921
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.201339 0.25348 0.271092 0.0692671 0.167886

CAGE analysis