Hb_000853_430

Information

Type -
Description -
Location Contig853: 303291-306419
Sequence    

Annotation

kegg
ID rcu:RCOM_1347730
description hypothetical protein
nr
ID XP_012082862.1
description PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JWK8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14003 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60512: 303374-306267 , PASA_asmbl_60513: 304348-304748 , PASA_asmbl_60514: 304763-305053
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000853_430 0.0 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
2 Hb_001305_010 0.0654340246 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic [Jatropha curcas]
3 Hb_004678_040 0.0727704236 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
4 Hb_004093_090 0.0748720892 - - PREDICTED: uncharacterized protein LOC105633550 [Jatropha curcas]
5 Hb_000008_470 0.0762733561 - - calcium/calmodulin-dependent protein kinase kinase, putative [Ricinus communis]
6 Hb_012389_020 0.0769559672 - - hypothetical protein POPTR_0006s05190g [Populus trichocarpa]
7 Hb_000302_270 0.0773521591 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
8 Hb_000362_200 0.0774921554 - - exonuclease family protein [Populus trichocarpa]
9 Hb_001934_030 0.0779541382 transcription factor TF Family: HSF Heat shock factor protein, putative [Ricinus communis]
10 Hb_180424_010 0.0830889946 - - Charged multivesicular body protein, putative [Ricinus communis]
11 Hb_000661_140 0.083578067 - - PREDICTED: uncharacterized protein LOC105648317 isoform X2 [Jatropha curcas]
12 Hb_000771_120 0.0854843575 - - PREDICTED: uncharacterized protein LOC105648352 isoform X1 [Jatropha curcas]
13 Hb_000010_400 0.0857781209 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
14 Hb_002192_080 0.0858378021 - - hypothetical protein B456_013G069200 [Gossypium raimondii]
15 Hb_000610_010 0.0881838279 - - PREDICTED: SKP1-like protein 1B [Musa acuminata subsp. malaccensis]
16 Hb_000926_310 0.0884189828 - - uncharacterized protein LOC100500241 [Glycine max]
17 Hb_009421_020 0.0884466743 - - PREDICTED: caltractin-like [Jatropha curcas]
18 Hb_020367_050 0.0909053377 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranylgeranyl pyrophosphate synthase, putative [Ricinus communis]
19 Hb_007813_040 0.0913037423 - - PREDICTED: mediator of RNA polymerase II transcription subunit 34 isoform X2 [Jatropha curcas]
20 Hb_003078_040 0.0914186506 - - PREDICTED: hit family protein 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000853_430 Hb_000853_430 Hb_001305_010 Hb_001305_010 Hb_000853_430--Hb_001305_010 Hb_004678_040 Hb_004678_040 Hb_000853_430--Hb_004678_040 Hb_004093_090 Hb_004093_090 Hb_000853_430--Hb_004093_090 Hb_000008_470 Hb_000008_470 Hb_000853_430--Hb_000008_470 Hb_012389_020 Hb_012389_020 Hb_000853_430--Hb_012389_020 Hb_000302_270 Hb_000302_270 Hb_000853_430--Hb_000302_270 Hb_007951_060 Hb_007951_060 Hb_001305_010--Hb_007951_060 Hb_006185_050 Hb_006185_050 Hb_001305_010--Hb_006185_050 Hb_003417_020 Hb_003417_020 Hb_001305_010--Hb_003417_020 Hb_002530_030 Hb_002530_030 Hb_001305_010--Hb_002530_030 Hb_000327_120 Hb_000327_120 Hb_001305_010--Hb_000327_120 Hb_004678_040--Hb_000008_470 Hb_000521_320 Hb_000521_320 Hb_004678_040--Hb_000521_320 Hb_004678_040--Hb_000302_270 Hb_025645_010 Hb_025645_010 Hb_004678_040--Hb_025645_010 Hb_002256_030 Hb_002256_030 Hb_004678_040--Hb_002256_030 Hb_000610_010 Hb_000610_010 Hb_004093_090--Hb_000610_010 Hb_005588_030 Hb_005588_030 Hb_004093_090--Hb_005588_030 Hb_120410_010 Hb_120410_010 Hb_004093_090--Hb_120410_010 Hb_000959_210 Hb_000959_210 Hb_004093_090--Hb_000959_210 Hb_000362_200 Hb_000362_200 Hb_004093_090--Hb_000362_200 Hb_000009_530 Hb_000009_530 Hb_004093_090--Hb_000009_530 Hb_000008_470--Hb_001305_010 Hb_004324_070 Hb_004324_070 Hb_000008_470--Hb_004324_070 Hb_000175_460 Hb_000175_460 Hb_000008_470--Hb_000175_460 Hb_000230_200 Hb_000230_200 Hb_000008_470--Hb_000230_200 Hb_002192_080 Hb_002192_080 Hb_012389_020--Hb_002192_080 Hb_004586_140 Hb_004586_140 Hb_012389_020--Hb_004586_140 Hb_003125_200 Hb_003125_200 Hb_012389_020--Hb_003125_200 Hb_004931_070 Hb_004931_070 Hb_012389_020--Hb_004931_070 Hb_012389_020--Hb_000302_270 Hb_000302_270--Hb_000521_320 Hb_000185_070 Hb_000185_070 Hb_000302_270--Hb_000185_070 Hb_000771_120 Hb_000771_120 Hb_000302_270--Hb_000771_120 Hb_000010_400 Hb_000010_400 Hb_000302_270--Hb_000010_400 Hb_000789_060 Hb_000789_060 Hb_000302_270--Hb_000789_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.5635 6.27188 10.2124 4.41913 8.32979 8.2293
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.17092 11.735 9.37311 4.05088 2.94161

CAGE analysis