Hb_000853_440

Information

Type -
Description -
Location Contig853: 308817-312666
Sequence    

Annotation

kegg
ID rcu:RCOM_1347720
description protein disulfide isomerase, putative (EC:5.3.4.1)
nr
ID XP_012082863.1
description PREDICTED: probable protein disulfide-isomerase A6 [Jatropha curcas]
swissprot
ID P38661
description Probable protein disulfide-isomerase A6 OS=Medicago sativa PE=2 SV=1
trembl
ID A0A067JZP7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14004 PE=3 SV=1
Gene Ontology
ID GO:0005783
description probable protein disulfide-isomerase a6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60515: 308860-312708 , PASA_asmbl_60516: 310407-311023
cDNA
(Sanger)
(ID:Location)		 038_I08.ab1: 309987-312692 , 044_M09.ab1: 310215-312692 , 046_I08.ab1: 310181-312692 , 050_C13.ab1: 310403-312692

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000853_440 0.0 - - PREDICTED: probable protein disulfide-isomerase A6 [Jatropha curcas]
2 Hb_002025_250 0.0847728782 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3 [Jatropha curcas]
3 Hb_000101_080 0.0880311732 - - PREDICTED: protein CREG1 [Jatropha curcas]
4 Hb_000078_140 0.0968105965 - - PREDICTED: WD repeat-containing protein 11 [Jatropha curcas]
5 Hb_011377_040 0.0976532321 - - PREDICTED: uncharacterized protein LOC105647286 [Jatropha curcas]
6 Hb_003159_050 0.0982046269 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial isoform X1 [Jatropha curcas]
7 Hb_074197_040 0.098235316 - - PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]
8 Hb_000416_200 0.1016052096 transcription factor TF Family: PHD PREDICTED: probable Histone-lysine N-methyltransferase ATXR5 [Jatropha curcas]
9 Hb_000046_540 0.1029496854 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Populus euphratica]
10 Hb_003605_020 0.1042332417 - - exocyst complex component sec6, putative [Ricinus communis]
11 Hb_000260_460 0.1042781588 - - Ethanolamine-phosphate cytidylyltransferase, putative [Ricinus communis]
12 Hb_079526_040 0.1045019297 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
13 Hb_001703_050 0.1054989808 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
14 Hb_001195_400 0.1062359632 - - glucose-6-phosphate isomerase, putative [Ricinus communis]
15 Hb_012330_010 0.1064018574 - - PREDICTED: polyadenylate-binding protein-interacting protein 12-like isoform X1 [Jatropha curcas]
16 Hb_001507_120 0.1066333162 - - transcription factor, putative [Ricinus communis]
17 Hb_170138_010 0.107425311 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001269_600 0.1085097848 - - protein phosphatase 2c, putative [Ricinus communis]
19 Hb_001348_080 0.1116963664 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
20 Hb_012573_050 0.1125279826 - - choline/ethanolamine kinase family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000853_440 Hb_000853_440 Hb_002025_250 Hb_002025_250 Hb_000853_440--Hb_002025_250 Hb_000101_080 Hb_000101_080 Hb_000853_440--Hb_000101_080 Hb_000078_140 Hb_000078_140 Hb_000853_440--Hb_000078_140 Hb_011377_040 Hb_011377_040 Hb_000853_440--Hb_011377_040 Hb_003159_050 Hb_003159_050 Hb_000853_440--Hb_003159_050 Hb_074197_040 Hb_074197_040 Hb_000853_440--Hb_074197_040 Hb_000046_540 Hb_000046_540 Hb_002025_250--Hb_000046_540 Hb_008705_020 Hb_008705_020 Hb_002025_250--Hb_008705_020 Hb_002078_340 Hb_002078_340 Hb_002025_250--Hb_002078_340 Hb_000529_180 Hb_000529_180 Hb_002025_250--Hb_000529_180 Hb_000167_110 Hb_000167_110 Hb_002025_250--Hb_000167_110 Hb_001512_040 Hb_001512_040 Hb_000101_080--Hb_001512_040 Hb_000260_460 Hb_000260_460 Hb_000101_080--Hb_000260_460 Hb_032202_220 Hb_032202_220 Hb_000101_080--Hb_032202_220 Hb_000703_190 Hb_000703_190 Hb_000101_080--Hb_000703_190 Hb_079526_040 Hb_079526_040 Hb_000101_080--Hb_079526_040 Hb_000101_080--Hb_000078_140 Hb_000139_080 Hb_000139_080 Hb_000078_140--Hb_000139_080 Hb_000078_140--Hb_079526_040 Hb_000078_140--Hb_074197_040 Hb_000078_140--Hb_032202_220 Hb_003098_070 Hb_003098_070 Hb_000078_140--Hb_003098_070 Hb_001195_400 Hb_001195_400 Hb_000078_140--Hb_001195_400 Hb_006970_020 Hb_006970_020 Hb_011377_040--Hb_006970_020 Hb_011377_040--Hb_074197_040 Hb_012330_010 Hb_012330_010 Hb_011377_040--Hb_012330_010 Hb_001301_270 Hb_001301_270 Hb_011377_040--Hb_001301_270 Hb_011377_040--Hb_000078_140 Hb_011377_040--Hb_000046_540 Hb_001269_600 Hb_001269_600 Hb_003159_050--Hb_001269_600 Hb_007933_040 Hb_007933_040 Hb_003159_050--Hb_007933_040 Hb_012733_040 Hb_012733_040 Hb_003159_050--Hb_012733_040 Hb_007741_120 Hb_007741_120 Hb_003159_050--Hb_007741_120 Hb_012393_030 Hb_012393_030 Hb_003159_050--Hb_012393_030 Hb_009615_060 Hb_009615_060 Hb_003159_050--Hb_009615_060 Hb_000815_300 Hb_000815_300 Hb_074197_040--Hb_000815_300 Hb_074197_040--Hb_001301_270 Hb_065968_010 Hb_065968_010 Hb_074197_040--Hb_065968_010 Hb_074197_040--Hb_006970_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.6519 20.734 96.0954 88.5154 62.1047 48.3772
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.7879 35.5762 66.8404 77.1905 107.811

CAGE analysis